Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c19
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    79   1e-15
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    29   1.0  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   1.0  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.4  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   5.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   7.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   7.4  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
            Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 49/118 (41%), Positives = 67/118 (56%)
 Frame = -3

Query: 806  ICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFARRSV 627
            + QRA KLAI+ +IE +I RE          V+ MDE+  V ++ R H EEAMK ARRSV
Sbjct: 709  VVQRAVKLAIKDSIEEDIKRENETGEAPADDVV-MDEDASVSQVQRHHVEEAMKMARRSV 767

Query: 626  SDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLYS 453
            SD ++R+YE +A  L  SRG  T F+F +             + P+F  +G  DDLY+
Sbjct: 768  SDAEVRRYEAYAHQLLTSRGL-TGFQFDS--------ADSNTNGPSFGNDGA-DDLYA 815


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 237 KRKEKNTKPARESDCASQSHKIHVSNVNLIYS 142
           ++K+K+ KP  E+  +S  +K   SNVNL YS
Sbjct: 498 RKKQKSLKPDTENQESSVKNKKAKSNVNLQYS 529


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 686 VPEISRAHFEEAMKFARRSVSDNDIRKYE 600
           +P IS  HF+ +++  R SVS   I +YE
Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 692 DPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 588
           +P+  ++ A FE A K  + SVSD D +KY+  A+
Sbjct: 735 EPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 532  ELQGARVLQRATSPRSRRRGVTTTCTAKLCLA 437
            +L+ A  LQ+   PR+RR+G T   +AK  LA
Sbjct: 1411 KLKAAERLQKPAIPRTRRKGHTEPKSAKSLLA 1442


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 532 ELQGARVLQRATSPRSRRRGVTTTCTAKLCLARDL 428
           ELQ   V   + SPR R  GVT   TA++   R +
Sbjct: 60  ELQQKNVPPSSRSPRRRVAGVTNNVTARISSKRKI 94


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 427 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 329
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 657 LEVSAANLRNGVFLVHVHNGSGGLLLATPLAMDLRLDGLANGQLAGSLAYL 809
           L+ +  N+RN   L HV +G     LA  L   L  +G+ + +LAG++ +L
Sbjct: 12  LQKNQENIRNFTLLAHVDHGK--TTLADSL---LASNGIISSKLAGTVRFL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,928
Number of Sequences: 5004
Number of extensions: 56072
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)