Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c19
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 118 6e-27
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 118 6e-27
08_02_0657 - 19749835-19751942,19753123-19753561 46 4e-05
04_04_0545 + 26141335-26141793,26141883-26141981 32 0.47
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 31 1.4
09_04_0029 - 13932414-13933416,13933821-13933903 29 3.3
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 29 4.4
08_01_0601 - 5268520-5271112,5272448-5272950 29 4.4
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073... 29 4.4
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338... 29 5.8
11_05_0075 + 18856659-18856878,18856890-18857107,18858253-188583... 28 7.7
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 7.7
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 7.7
>10_08_0170 + 15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 118 bits (284), Expect = 6e-27
Identities = 64/121 (52%), Positives = 74/121 (61%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+TEICQRACK AIR+ IE +I RER M+ DE D + EI AHFEE+MK+AR
Sbjct: 702 ITEICQRACKYAIRENIEKDIERERRSKENPE--AMEEDEVDDIAEIKAAHFEESMKYAR 759
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLY 456
RSVSD DIRKY+ FAQTLQQSRGFG+ FRF + DDDLY
Sbjct: 760 RSVSDADIRKYQAFAQTLQQSRGFGSEFRFERTEAGAGAAADPFASAAAVAD---DDDLY 816
Query: 455 S 453
S
Sbjct: 817 S 817
>03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 118 bits (284), Expect = 6e-27
Identities = 64/121 (52%), Positives = 74/121 (61%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+TEICQRACK AIR+ IE +I E+ R M+ DE D + EI AHFEE+MK+AR
Sbjct: 693 ITEICQRACKYAIRENIEKDIEMEKRRKDNPE--AMEEDEVDDIAEIKAAHFEESMKYAR 750
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQPTFQEEGGDDDLY 456
RSVSD DIRKY+ FAQTLQQSRGFGT FRF + DDDLY
Sbjct: 751 RSVSDADIRKYQAFAQTLQQSRGFGTEFRFADQPASGAGAAADPFASAAAAAD--DDDLY 808
Query: 455 S 453
S
Sbjct: 809 S 809
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 46.0 bits (104), Expect = 4e-05
Identities = 27/74 (36%), Positives = 39/74 (52%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
+ EICQRACKLA+R+ ++ ++ +D HF+ AMK AR
Sbjct: 699 IKEICQRACKLAVREVVQKSTLVGKALAMAGAELTVD-------------HFKSAMKHAR 745
Query: 635 RSVSDNDIRKYEMF 594
+SVS+ D+ KYE F
Sbjct: 746 KSVSELDVIKYEYF 759
>04_04_0545 + 26141335-26141793,26141883-26141981
Length = 185
Score = 32.3 bits (70), Expect = 0.47
Identities = 23/92 (25%), Positives = 41/92 (44%)
Frame = +3
Query: 426 PRSRARHSLAVQVVVTPLLLERGLVAR*STRAPCSSRVCWESEVGSEAAALLQGLREHLV 605
P + R LA ++ + LLL + R+ + G EA A+++ +LV
Sbjct: 37 PPATGRRRLAASLLASQLLLLPAAATSVAGAFEFDLRITVPEQSGEEAEAVVKLHARNLV 96
Query: 606 LADVVVGHGAARELHRLLEVSAANLRNGVFLV 701
++ + REL L SAANL+ ++ +
Sbjct: 97 RVKGLIDARSWRELQAALRSSAANLKQDLYAI 128
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 810 GDMPASLQAGHSPGHRGGDPSREESPAAS 724
G A L+AGHSP D S E+SP++S
Sbjct: 333 GSPVARLRAGHSPATPSSDVSMEDSPSSS 361
>09_04_0029 - 13932414-13933416,13933821-13933903
Length = 361
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -1
Query: 523 GARVLQRATSPRSRRRGVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWR 344
G RV +TSP RR + + ++RD G + T +L+ A P P +
Sbjct: 202 GMRVTVISTSPGKRREALEHLGADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAPLFA 261
Query: 343 L 341
L
Sbjct: 262 L 262
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 511 LQRATSPRSRRRGVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRP-TTPTWRLAP 335
L R PR R R T T + R +PP + TR LSV P+ P P+ +A
Sbjct: 17 LSRTPPPRRRLRLRTPTPCHRASTTRRALHTPPHQRTRLPPLSVAPSASPLLNPSIHVAA 76
Query: 334 AGS 326
A S
Sbjct: 77 APS 79
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 600 LVLADVVVGHGAARELHR-LLEVSAANLRNGVFLVHVHNGSGGL 728
LV D G AA +H+ +L+ + A R+ FL HVH+G+ GL
Sbjct: 550 LVETDAAGGRVAAVSVHQAVLDFAQAEARDTNFL-HVHSGAAGL 592
>07_03_1170 -
24505743-24505875,24506087-24506475,24507133-24507369,
24507967-24508136,24510196-24510316
Length = 349
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 414 GGDAPRSRARHSLAVQVVVTPL 479
GGDA ++ HSL+V V+V+PL
Sbjct: 211 GGDADTTQLYHSLSVPVIVSPL 232
>01_06_0280 +
28129750-28129868,28130677-28131145,28133605-28133802,
28134168-28134412,28134749-28134907,28135491-28135578,
28135983-28136264
Length = 519
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LT +C+ A +R+ I + E M DE P ++ FEEA+ +
Sbjct: 448 LTNVCRDASMNGMRRKIAGKTRDEIKN--------MSKDEISKDP-VAMCDFEEALAKVQ 498
Query: 635 RSVSDNDIRKYE 600
+SVS DI K+E
Sbjct: 499 KSVSPADIEKHE 510
>11_05_0075 +
18856659-18856878,18856890-18857107,18858253-18858319,
18858706-18859397
Length = 398
Score = 28.3 bits (60), Expect = 7.7
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +3
Query: 333 AGARRHVGVV--GRHAGQTDRTLVLVYRDGGDAPRSRARHSLAVQVVVTPLLLERGLVAR 506
AG R G + G H G+ RT L+ A R AVQ +VTP ++A+
Sbjct: 251 AGRRAIAGRLAKGEH-GRRRRTGGLLPDSAATARRRVEGGDAAVQGIVTPSQESELVIAK 309
Query: 507 *STRAPCSSRV-CWESEVGSEAAALLQGL---REHLVLADV-VVGHGAARELHR 653
+ + WE + G+EA ALL+ L + L LA+ V GA E R
Sbjct: 310 TGDVIASTYYMRAWERDAGAEADALLEELWNVKAKLELAETKAVAAGALSEKAR 363
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 801 PASLQAGHSPGHRGGDPSREESPAASRRCR 712
P ++ AGH GHRGG SP R R
Sbjct: 41 PIAIAAGHGRGHRGGGHGGPASPRHHLRGR 70
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 33 YSKYSSYPTTYNMNLRATSSGHTLHKHQ*LN 125
YS +S+ TTYN A S H+LH Q L+
Sbjct: 1039 YSNHSTQATTYNSYGSAPVSSHSLHPGQGLD 1069
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,498,298
Number of Sequences: 37544
Number of extensions: 489762
Number of successful extensions: 1875
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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