Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c19
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        148   6e-36
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.64 
SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)     29   3.4  
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        29   6.0  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  148 bits (358), Expect = 6e-36
 Identities = 77/127 (60%), Positives = 89/127 (70%), Gaps = 6/127 (4%)
 Frame = -3

Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
           LTEICQRACKLAIR+AIE +I+RE+ R        M++++EDPVPEI + HFEEAMKFAR
Sbjct: 503 LTEICQRACKLAIREAIETDINREKQRVDNPDLD-MEVEDEDPVPEIRKDHFEEAMKFAR 561

Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP------TNXXXXXXXXXXXGDQPTFQEEG 474
           RSVSDNDIRKYEMFAQTLQQSRGFG NFRFP      +             +Q     + 
Sbjct: 562 RSVSDNDIRKYEMFAQTLQQSRGFGGNFRFPNQGTGGSQGGAGGAGGGSGDNQGDLYGDD 621

Query: 473 GDDDLYS 453
           GDDDLYS
Sbjct: 622 GDDDLYS 628


>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 404 LSRWWRCPEVASETQFSCTGRRHPPPPGTWAG--RPLKYPCPL 526
           L  W   P++ + + FS T +R PPPP T     RP+   C L
Sbjct: 503 LEGWLSSPDIEAGSCFSNTKQRPPPPPATVEDDIRPIALTCQL 545


>SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 805 YASEPAS--WPFARPSRRRSIARGVA-SSKPPLPLW 707
           Y+++PAS  WP    S+  S++RGV  S+KP  P W
Sbjct: 10  YSAKPASPWWPNVILSKVLSVSRGVTYSAKPASPWW 45



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -1

Query: 805 YASEPAS--WPFARPSRRRSIARGVA-SSKPPLPLW 707
           Y+++PAS  WP    S+  S++RGV  S+KP  P W
Sbjct: 36  YSAKPASPWWPNVILSKVLSVSRGVTYSAKPASPWW 71


>SB_1933| Best HMM Match : PI3_PI4_kinase (HMM E-Value=4.06377e-44)
          Length = 915

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 562 EPTSDSQQTRELQGARVLQRAT-SPRSRRRGVTTTCTAKLCLARDLGASPPSR*TRTN 392
           E  SDSQ +R ++   +  R    PR R+  V  T   K       GA+PPS+ TR N
Sbjct: 196 EIVSDSQISRSVEILAIAARQLFRPRKRKGAVLKTIRRKKVSKGRAGANPPSK-TRKN 252


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 330 PAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLAVQV 464
           P   +RH G   RHAG  D     +Y D  DA R R   S +++V
Sbjct: 787 PYAEKRHEGNQDRHAGNVD-----IYNDSVDASRVRDYSSSSMRV 826


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -3

Query: 698 EEDPVPEISRAHFEEAMKFARRSVSDNDIRKY 603
           EE  +P +++  F+ A+K   +SVSD DI+KY
Sbjct: 478 EELDLP-VNQEDFDMALKKVSKSVSDADIKKY 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,724,029
Number of Sequences: 59808
Number of extensions: 516281
Number of successful extensions: 1502
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)