Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c19
(817 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein. 141 2e-33
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 141 2e-33
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 141 2e-33
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 141 2e-33
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 141 2e-33
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 141 2e-33
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 141 2e-33
BC111958-1|AAI11959.1| 710|Homo sapiens ral guanine nucleotide ... 32 2.2
BC101756-1|AAI01757.1| 710|Homo sapiens ral guanine nucleotide ... 32 2.2
BC034491-1|AAH34491.1| 406|Homo sapiens chromosome 12 open read... 32 2.2
BC027600-1|AAH27600.1| 406|Homo sapiens chromosome 12 open read... 32 2.2
BC026075-1|AAH26075.1| 406|Homo sapiens chromosome 12 open read... 32 2.2
BC024183-1|AAH24183.1| 406|Homo sapiens chromosome 12 open read... 32 2.2
AK074082-1|BAB84908.1| 497|Homo sapiens FLJ00153 protein protein. 32 2.2
U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein ... 31 3.8
U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein ... 31 3.8
BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein. 31 3.8
>BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein.
Length = 475
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 356 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 413
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 414 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 472
Query: 461 LY 456
LY
Sbjct: 473 LY 474
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 687 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 803
Query: 461 LY 456
LY
Sbjct: 804 LY 805
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 687 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 803
Query: 461 LY 456
LY
Sbjct: 804 LY 805
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 525 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 582
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 583 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 641
Query: 461 LY 456
LY
Sbjct: 642 LY 643
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 687 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 803
Query: 461 LY 456
LY
Sbjct: 804 LY 805
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 687 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 803
Query: 461 LY 456
LY
Sbjct: 804 LY 805
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 141 bits (342), Expect = 2e-33
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = -3
Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFAR 636
LTEICQRACKLAIR++IE+EI RER R M+++E+DPVPEI R HFEEAM+FAR
Sbjct: 687 LTEICQRACKLAIRESIESEIRRERERQTNPS--AMEVEEDDPVPEIRRDHFEEAMRFAR 744
Query: 635 RSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPTNXXXXXXXXXXXGDQP--TFQEEGGDDD 462
RSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+ G + E DDD
Sbjct: 745 RSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDD 803
Query: 461 LY 456
LY
Sbjct: 804 LY 805
>BC111958-1|AAI11959.1| 710|Homo sapiens ral guanine nucleotide
dissociation stimulator-like 3 protein.
Length = 710
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TSPRSRRR-GVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWRLAPAGS 326
+SPR RRR +T +AKL + S + SV P P++P R APAGS
Sbjct: 511 SSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGS 569
>BC101756-1|AAI01757.1| 710|Homo sapiens ral guanine nucleotide
dissociation stimulator-like 3 protein.
Length = 710
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TSPRSRRR-GVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWRLAPAGS 326
+SPR RRR +T +AKL + S + SV P P++P R APAGS
Sbjct: 511 SSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGS 569
>BC034491-1|AAH34491.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 362 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 538
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 539 LLGI 550
+ G+
Sbjct: 111 VYGL 114
>BC027600-1|AAH27600.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 362 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 538
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 539 LLGI 550
+ G+
Sbjct: 111 VYGL 114
>BC026075-1|AAH26075.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 362 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 538
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 539 LLGI 550
+ G+
Sbjct: 111 VYGL 114
>BC024183-1|AAH24183.1| 406|Homo sapiens chromosome 12 open reading
frame 12 protein.
Length = 406
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 362 GATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRR-HPPPPGTWAGRPLKYPCPL*LPR 538
G R+ +Q G +W P V S + C G PPPPG W K+PCP+ + R
Sbjct: 61 GPPRKQPKQQHGPG---FWFQPPVCSN--WGCWGGPWRPPPPGFW-----KFPCPVQVFR 110
Query: 539 LLGI 550
+ G+
Sbjct: 111 VYGL 114
>AK074082-1|BAB84908.1| 497|Homo sapiens FLJ00153 protein protein.
Length = 497
Score = 32.3 bits (70), Expect = 2.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 499 TSPRSRRR-GVTTTCTAKLCLARDLGASPPSR*TRTNVLSVCPACRPTTPTWRLAPAGS 326
+SPR RRR +T +AKL + S + SV P P++P R APAGS
Sbjct: 308 SSPRIRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSVSPGSPPSSPRSRDAPAGS 366
>U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein
NVLp.1 protein.
Length = 750
Score = 31.5 bits (68), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 680 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 576
++S HFEEA K R S+S D YE ++L +
Sbjct: 716 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 750
>U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein
NVLp.2 protein.
Length = 856
Score = 31.5 bits (68), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 680 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 576
++S HFEEA K R S+S D YE ++L +
Sbjct: 822 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 856
>BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein.
Length = 659
Score = 31.5 bits (68), Expect = 3.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 680 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 576
++S HFEEA K R S+S D YE ++L +
Sbjct: 625 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 659
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,518,684
Number of Sequences: 237096
Number of extensions: 2498946
Number of successful extensions: 7757
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7741
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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