Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c19
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   140   1e-33
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   140   1e-33
Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   139   2e-33
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    29   5.3  
AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical ...    29   5.3  
AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival...    29   5.3  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    29   5.3  

>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  140 bits (338), Expect = 1e-33
 Identities = 68/93 (73%), Positives = 77/93 (82%), Gaps = 2/93 (2%)
 Frame = -3

Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEE--DPVPEISRAHFEEAMKF 642
           LTEICQRACKLAIR++IE EI +E+ R          M++E  DPVPEI+RAHFEEAMKF
Sbjct: 692 LTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKF 751

Query: 641 ARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 543
           ARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 752 ARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  140 bits (338), Expect = 1e-33
 Identities = 68/93 (73%), Positives = 77/93 (82%), Gaps = 2/93 (2%)
 Frame = -3

Query: 815 LTEICQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEE--DPVPEISRAHFEEAMKF 642
           LTEICQRACKLAIR++IE EI +E+ R          M++E  DPVPEI+RAHFEEAMKF
Sbjct: 692 LTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELADPVPEITRAHFEEAMKF 751

Query: 641 ARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 543
           ARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 752 ARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784


>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  139 bits (337), Expect = 2e-33
 Identities = 68/93 (73%), Positives = 76/93 (81%), Gaps = 2/93 (2%)
 Frame = -3

Query: 815 LTEICQRACKLAIRQAIEAEIH--RERSRXXXXXXAVMDMDEEDPVPEISRAHFEEAMKF 642
           LTEICQRACKLAIR++IE EI   +ER         +M+ D  DPVPEI+RAHFEEAMKF
Sbjct: 694 LTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRAHFEEAMKF 753

Query: 641 ARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 543
           ARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 754 ARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 786


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 633 LRVRQRHPQVRDVRADPAAEPRLRNQLQIPNKRGSYRGHGYFS 505
           LR R    Q ++ +  P   P + + +Q+P ++G++ G G F+
Sbjct: 5   LRTRGNSAQDKNKKHVPNVPPIIYDDMQVPYEKGAFLGEGGFA 47


>AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48C3A.7 protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 704 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 600
           ++ ++ V  +   HF EA    R SV++ D +KYE
Sbjct: 763 LENDESVKGVGMRHFREAASRIRPSVTEADRKKYE 797


>AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival
           CED-4-interactingprotein MAC-1 protein.
          Length = 813

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 704 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 600
           ++ ++ V  +   HF EA    R SV++ D +KYE
Sbjct: 763 LENDESVKGVGMRHFREAASRIRPSVTEADRKKYE 797


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 633 LRVRQRHPQVRDVRADPAAEPRLRNQLQIPNKRGSYRGHGYFS 505
           LR R    Q ++ +  P   P + + +Q+P ++G++ G G F+
Sbjct: 5   LRTRGNSAQDKNKKHVPNVPPIIYDDMQVPYEKGAFLGEGGFA 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,494,373
Number of Sequences: 27780
Number of extensions: 351096
Number of successful extensions: 1031
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)