Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c19
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.84 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   4.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 341 QAPCWCGGATRRTNRQDVSSGLSRWWRCPEV 433
           Q   W G      N  D + G  R+WR P V
Sbjct: 258 QTKGWDGSNMVEGNESDHNDGRLRYWRTPSV 288



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 803 CQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDP 687
           C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 577 CVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 615


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 803 CQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDP 687
           C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 343 CVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 381


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 803 CQRACKLAIRQAIEAEIHRERSRXXXXXXAVMDMDEEDP 687
           C   CK+ +R  +E+E+ + + R          M + DP
Sbjct: 258 CVMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVDP 296


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 801 PASLQAGHSPGHRGGDP 751
           PA++Q GH+P H    P
Sbjct: 454 PAAIQIGHTPHHHPHPP 470


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 635 RSVSDNDIRKYEMF 594
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 763 RRRSIARGVASSKPPLPLWTWTR 695
           ++++  +G AS+  P PL+ W R
Sbjct: 243 QQQAAPQGAASANLPSPLYPWMR 265


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMNLR 80
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMN 74
           +YS Y++Y   YN N
Sbjct: 90  KYSNYNNYNNNYNNN 104


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 30  RYSKYSSYPTTYNMN 74
           +YS Y++Y   YN N
Sbjct: 90  KYSNYNNYNNNYNNN 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,225
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)