Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c14
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   1.6  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   2.7  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   3.6  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    27   4.8  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   6.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.3  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   8.4  

>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/52 (21%), Positives = 22/52 (42%)
 Frame = -2

Query: 833 VRVQDPNWPSESSSTWLKVVPYGFRKLLSMDNEDIQRLSNYSYRERLRGFQW 678
           VR+  P W +E     ++ + Y    L  + ++ +  +  Y      RG+ W
Sbjct: 271 VRISTPYWSTEDGKREIQELEYELESLKVIRHDLLASIYEYQLERETRGYGW 322


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 658 VSYYSHYLNALLHSIHEDGSVVEGYF--AWSLMDNFEWDDGYVS 533
           +S + H   +LL S  +D  ++       W +  NF  +DGYV+
Sbjct: 63  ISLHVHLAQSLLRSAADDLPLISWLCDTVWKMQGNFTQEDGYVA 106


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 87  KQKESPSPQSKRNCATKS----PETTQRKLTRSNTNQKIRDDYLFSLVFSVKLIRDQ 245
           K K+SP  + KR  +  S    PET  RKL  S + +KI    +  L  + +L   Q
Sbjct: 365 KLKDSPFKKPKRRYSKSSTLVLPETNIRKLANSYSQKKIAGSVIEELTTASELFFKQ 421


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 559 FEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKL---YSKVIASRRLPEDYNP 413
           FEWD+G  S    + +D  SP      ++ + L   Y+    SR   +D  P
Sbjct: 59  FEWDNGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKP 110


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 842 VGIVRVQDPNWPSESSSTWLKVVPYGFRKLLSMDNEDIQRLSNYSY 705
           +G ++V   NW +ES S W ++    +    S D  D + LS +SY
Sbjct: 551 MGNIKVVKLNWLTESLSQWKRLPESDYLLYPSYDLPD-RNLSEHSY 595


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 112 NPSATAPRSRQRQRKEN*HGRILTRKYETTTYSH 213
           NP  T+ R RQ++ K+N +  +      T T  H
Sbjct: 390 NPDTTSDRCRQQESKDNGNRTVFLGNLHTKTKGH 423


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 8   YKIYTVFWGFTIFSFLGLVFM-VMMLPE 88
           YKIY       I+ FLG+    VM+LPE
Sbjct: 167 YKIYVTLLKIDIYFFLGVTVQYVMVLPE 194


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 96  ESPSPQSKRNCATKSPETTQRKLTRSNTNQ 185
           E P PQS R+    S   TQR L R   N+
Sbjct: 282 EQPQPQSSRSRPRSSTIPTQRTLERLRENR 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,472,231
Number of Sequences: 5004
Number of extensions: 69072
Number of successful extensions: 241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)