Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c14
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   2.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.6  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 625 LHSIHEDGSVVEGYFAWSLMDNFEWDDG 542
           +HSI +  S+V    A+  +DN  W DG
Sbjct: 20  IHSISD--SLVNAKLAFGFLDNSVWADG 45


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 16/56 (28%), Positives = 22/56 (39%)
 Frame = -3

Query: 589 GYFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPED 422
           G+ A  L   F W     S  G +++  E+P      K     YS V   + LP D
Sbjct: 479 GFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNTKPIDMEYSSVAQQQFLPHD 534


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 603 EALLKGTSRGV*WTTLNGMTDMCPASVCIWS 511
           + LLK    G   TTLN  T  CP ++ + S
Sbjct: 290 DCLLKKERNGPTQTTLNATTLFCPPNLRLTS 320


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 603 EALLKGTSRGV*WTTLNGMTDMCPASVCIWS 511
           + LLK    G   TTLN  T  CP ++ + S
Sbjct: 380 DCLLKKERNGPTQTTLNATTLFCPPNLRLTS 410


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 84  QKQKESPSPQSKRNCATKSPETTQRK 161
           +K K+S SP   ++     P+TTQR+
Sbjct: 542 KKTKQSLSPSENQSKMEILPKTTQRQ 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,783
Number of Sequences: 438
Number of extensions: 4801
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)