Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c11
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    68   1e-12
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    59   6e-10
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   4.2  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   5.5  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   9.7  
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 47/130 (36%), Positives = 70/130 (53%)
 Frame = -2

Query: 812 PTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQYQT 633
           P +NRL ES+ LF SI N++W    S+ILFLNK DL  +K+       +DY   F QY+ 
Sbjct: 238 PERNRLVESISLFDSIINSQWFMHSSIILFLNKFDLFRKKL--EHVPFQDY---FPQYEG 292

Query: 632 PTDMKPDPKDHPEVTRAKFFIREEFLRISTATGDGKHDCYAHFTCAVDTDNIQRVFNGCR 453
              +K        +TR  + +   +L ++ +    KH+ Y H T AVDT NI+ VF+  +
Sbjct: 293 KNSVK-------SITR--YIL---WLFVNPSINRAKHNIYPHITTAVDTSNIKVVFSAVK 340

Query: 452 NIIQRWHLKQ 423
             I +  LK+
Sbjct: 341 ETILQHSLKE 350


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 59.3 bits (137), Expect = 6e-10
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
 Frame = -2

Query: 803 NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSRLEDYFHEFAQY-QTPT 627
           N+++E+L L+ SI N+ W    ++ILFLNK DL   KV    S ++ +F ++ +   TPT
Sbjct: 281 NQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHI--SPIQKHFPDYQEVGSTPT 338

Query: 626 DMKPD-PKDHPEVTRAKFFIREEFLRISTATGDGKHDCYAHFTCAVDTDNIQRVFNGCRN 450
            ++   P     V    ++    +L+  +        CY HFT A DT  +QRV    ++
Sbjct: 339 FVQTQCPLADNAVRSGMYYF---YLKFESLNRIASRSCYCHFTTATDTSLLQRVMVSVQD 395

Query: 449 IIQRWHLK 426
            I   +L+
Sbjct: 396 TIMSNNLQ 403


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 301 VCWFVCPFVFLLWTVRN 351
           +CWF+  F+ LL TVR+
Sbjct: 194 ICWFIFTFLVLLCTVRS 210


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 471 SVQRLPEHHPAVAFEAIRTTIADI--RVLSTL--ELTNVIAFTSVSN 343
           S+ ++P HHP +    +R    D+  ++ S L  +  NV+  TSV N
Sbjct: 170 SLSKVPTHHPFINSNILRIEANDLIEKIFSILFSDSLNVLYITSVLN 216


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
 Frame = -2

Query: 566 EEFLRISTATGDGKHD----CYAH-FTCAVDTDNIQRVFNGCRNIIQR--WHLKQY 420
           EEF   + A   G  D    CY++   C +  +N ++V N C  ++QR   H K Y
Sbjct: 84  EEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQRDSTHAKAY 139


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 812 PTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV 690
           PT N L E+   F S WN    +   V   L  + L AEK+
Sbjct: 87  PTNNELEETDAGFDSYWNKITAKAKVVSSLLGTKILPAEKI 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,044
Number of Sequences: 5004
Number of extensions: 46296
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)