Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c11
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.83 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   7.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 447 HPAVAFEAIRTTIADIRVLSTLELTNVIAFTSVSNRPQQK 328
           HP +  E ++  I D+R L+TL    ++AF     + Q +
Sbjct: 381 HPDILRELLKK-IPDLRTLNTLHSEKLLAFKMTEQQQQMQ 419


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 31  ILSLRLI*TLNDSKASVDHVLIKYSKNNSIR*IVTLV 141
           IL+  ++  +  S+     +LI +SKNN+I  I  LV
Sbjct: 486 ILNKTVLAVVRQSEEEAVSLLINFSKNNTIVDISKLV 522


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 650 FAQYQTPTDMKPDPKDHP 597
           F  Y T   M PDPK  P
Sbjct: 194 FGFYDTARGMLPDPKKTP 211


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 650 FAQYQTPTDMKPDPKDHP 597
           F  Y T   M PDPK  P
Sbjct: 194 FGFYDTARGMLPDPKKTP 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,401
Number of Sequences: 438
Number of extensions: 3186
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)