Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c08
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 28 4.9
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115... 28 4.9
03_05_0366 - 23505755-23506441 28 4.9
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 28 6.5
11_06_0511 - 24434007-24436814 27 8.5
09_02_0628 + 11364169-11364233,11365135-11365648 27 8.5
06_01_0593 + 4279988-4281325 27 8.5
05_03_0575 - 15643819-15644295 27 8.5
05_03_0527 - 15025031-15025993 27 8.5
05_03_0524 + 14994170-14995132 27 8.5
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Frame = -2
Query: 523 LRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKAST 344
L+ +VLPL + ++ ++L EG A D+L P Q+++ F H T
Sbjct: 178 LKPDLVLPLMETLPIEQLASYLPEGPWTA------GDILELLQSPPLRQQVEAFTHVLRT 231
Query: 343 LSYDTAQKHI--AQFTKVVSHVWEII------SKGREDWEGESMRSTGMQP 215
D AQ + +++ V+ E + + G D + ES R G P
Sbjct: 232 GQIDLAQFGVDPSKYKFTVASFLEALEDSVAKASGAGDKDSESQRGGGNDP 282
>04_03_0566 +
17209455-17209565,17210159-17210203,17211456-17211569,
17211943-17212081,17212324-17212415,17213245-17213517
Length = 257
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 301 KVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGK 161
K+V++ W + E WE + +P H ++D++ + + TG+
Sbjct: 10 KMVANSWHPFEEAAEPWEKSTGGHATRKPEHFLSDSYRINETMTTGE 56
>03_05_0366 - 23505755-23506441
Length = 228
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 191 CFSNGSRNGKRATTRYGEYGWSRGSW 114
C S+G R+G R G GW R W
Sbjct: 78 CGSSGGRHGGHRRQRQGGSGWERHPW 103
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +3
Query: 450 PSVK*ASVS--SRSQLN*SGKTILDRNEAACS 539
PS + ++VS S++ L SGKTILDR+E++ S
Sbjct: 38 PSFESSAVSDVSKADLRASGKTILDRSESSKS 69
>11_06_0511 - 24434007-24436814
Length = 935
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -2
Query: 418 PDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGR 260
PD+ R P+ L++ + + DT +KH+ + T++ + + +I +GR
Sbjct: 705 PDIYRAVKAPKTVNYLKELRTLETVQASDTFEKHVEKLTQLTT-LSVVIGEGR 756
>09_02_0628 + 11364169-11364233,11365135-11365648
Length = 192
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 319 HIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHN-IADTHALVTAVGTGKGLRPGM 143
H A F + + + I G+ WE + + MQPT++ I + ++ V T + P M
Sbjct: 101 HFANFEQQLRQL--DIYYGKNKWEYSPLSLSSMQPTYSPIVASLCNISIVATNTSVLPPM 158
Query: 142 ANMV 131
N +
Sbjct: 159 LNAI 162
>06_01_0593 + 4279988-4281325
Length = 445
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 328 AQKHIAQFTKVVSHVWEIISKGR 260
A K ++ FT VV+HVW K R
Sbjct: 246 AGKRLSTFTAVVAHVWRCACKAR 268
>05_03_0575 - 15643819-15644295
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 156 SPFPVPTAVTKACVSAMLCVGCIPVDL 236
SP P +A ACV+ + VGC P+ L
Sbjct: 117 SPTPERSADMGACVAIAVAVGCTPLSL 143
>05_03_0527 - 15025031-15025993
Length = 320
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 457 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTL 341
T+ R+PA H+ + DLLR + + ++ N A TL
Sbjct: 236 TQTRIPAAMHEEILDLLRCFADVEVRHIYREGNSMAHTL 274
>05_03_0524 + 14994170-14995132
Length = 320
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 457 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTL 341
T+ R+PA H+ + DLLR + + ++ N A TL
Sbjct: 236 TQTRIPAAMHEEILDLLRCFADVEVRHIYREGNSMAHTL 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,092
Number of Sequences: 37544
Number of extensions: 265764
Number of successful extensions: 707
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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