Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c08
(593 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymer... 127 3e-29
BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein. 90 5e-18
BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymer... 90 5e-18
AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymer... 90 5e-18
AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymer... 90 5e-18
D14811-1|BAA03552.1| 274|Homo sapiens KIAA0110 protein. 30 5.4
CR456893-1|CAG33174.1| 274|Homo sapiens MAD2L1BP protein. 30 5.4
BC002904-1|AAH02904.1| 274|Homo sapiens MAD2L1 binding protein ... 30 5.4
AL136131-1|CAC19507.1| 274|Homo sapiens RP1-261G23.6 protein. 30 5.4
>AF521562-1|AAM76709.1| 268|Homo sapiens mediator of RNA polymerase
II transcription subunit MED8 protein.
Length = 268
Score = 127 bits (306), Expect = 3e-29
Identities = 85/221 (38%), Positives = 118/221 (53%), Gaps = 24/221 (10%)
Frame = -2
Query: 592 NYAILSGHLTGLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLVPD 413
++A+LSG L L+K+L+ E+ R+++++PL LS +RDE L TEGRVP +H++VPD
Sbjct: 48 SFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPD 107
Query: 412 LLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGESMR 233
LRTKP+P+ E++ +Q A+ + D AQK I K+ S++ E ISK E+ E ES
Sbjct: 108 HLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGG 165
Query: 232 STGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQXXXXXXXXXXXXPQL 80
+ T N DT+ALV AV GKGL PG A G Q+
Sbjct: 166 LRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQM 225
Query: 79 GPAPSTLP---------------KAPSAIKTNIKAANQIHP 2
APS K PS IKTNIK+A+ +HP
Sbjct: 226 AGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHP 265
>BC010543-1|AAH10543.1| 212|Homo sapiens MED8 protein protein.
Length = 212
Score = 90.2 bits (214), Expect = 5e-18
Identities = 67/176 (38%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Frame = -2
Query: 457 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 278
TEGRVP +H++VPD LRTKP+P+ E++ +Q A+ + D AQK I K+ S++ E
Sbjct: 4 TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63
Query: 277 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 125
ISK E+ E ES + T N DT+ALV AV GKGL PG A G
Sbjct: 64 KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121
Query: 124 XXXXXXXXXXXXPQLGPAPSTLP---------------KAPSAIKTNIKAANQIHP 2
Q+ APS K PS IKTNIK+A+ +HP
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHP 176
>BC010019-1|AAH10019.3| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 90.2 bits (214), Expect = 5e-18
Identities = 67/176 (38%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Frame = -2
Query: 457 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 278
TEGRVP +H++VPD LRTKP+P+ E++ +Q A+ + D AQK I K+ S++ E
Sbjct: 4 TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63
Query: 277 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 125
ISK E+ E ES + T N DT+ALV AV GKGL PG A G
Sbjct: 64 KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121
Query: 124 XXXXXXXXXXXXPQLGPAPSTLP---------------KAPSAIKTNIKAANQIHP 2
Q+ APS K PS IKTNIK+A+ +HP
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHP 176
>AL139289-6|CAI23382.1| 179|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 179
Score = 90.2 bits (214), Expect = 5e-18
Identities = 67/176 (38%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Frame = -2
Query: 457 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 278
TEGRVP +H++VPD LRTKP+P+ E++ +Q A+ + D AQK I K+ S++ E
Sbjct: 4 TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63
Query: 277 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 125
ISK E+ E ES + T N DT+ALV AV GKGL PG A G
Sbjct: 64 KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121
Query: 124 XXXXXXXXXXXXPQLGPAPSTLP---------------KAPSAIKTNIKAANQIHP 2
Q+ APS K PS IKTNIK+A+ +HP
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHP 176
>AL139289-5|CAI23381.1| 212|Homo sapiens mediator of RNA polymerase
II transcription, subunit 8 homolog (S. cerevisiae)
protein.
Length = 212
Score = 90.2 bits (214), Expect = 5e-18
Identities = 67/176 (38%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Frame = -2
Query: 457 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 278
TEGRVP +H++VPD LRTKP+P+ E++ +Q A+ + D AQK I K+ S++ E
Sbjct: 4 TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63
Query: 277 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 125
ISK E+ E ES + T N DT+ALV AV GKGL PG A G
Sbjct: 64 KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121
Query: 124 XXXXXXXXXXXXPQLGPAPSTLP---------------KAPSAIKTNIKAANQIHP 2
Q+ APS K PS IKTNIK+A+ +HP
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHP 176
>D14811-1|BAA03552.1| 274|Homo sapiens KIAA0110 protein.
Length = 274
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 400 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 266
KP PQAE+ L++ + +S Q+ +A+ V+SH+ + ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144
>CR456893-1|CAG33174.1| 274|Homo sapiens MAD2L1BP protein.
Length = 274
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 400 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 266
KP PQAE+ L++ + +S Q+ +A+ V+SH+ + ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144
>BC002904-1|AAH02904.1| 274|Homo sapiens MAD2L1 binding protein
protein.
Length = 274
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 400 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 266
KP PQAE+ L++ + +S Q+ +A+ V+SH+ + ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144
>AL136131-1|CAC19507.1| 274|Homo sapiens RP1-261G23.6 protein.
Length = 274
Score = 30.3 bits (65), Expect = 5.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 400 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 266
KP PQAE+ L++ + +S Q+ +A+ V+SH+ + ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,727,073
Number of Sequences: 237096
Number of extensions: 1501574
Number of successful extensions: 3498
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3493
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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