Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c08
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical ...    66   1e-11
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    66   1e-11
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1b protein.
          Length = 297

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 40/124 (32%), Positives = 64/124 (51%)
 Frame = -2

Query: 523 LRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKAST 344
           LRS +++  +L  E DETL   T+GRV +  H LVP+ LRTKP P+ E      + + S 
Sbjct: 91  LRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALVPEYLRTKPNPEMENEEGMLDGERSA 150

Query: 343 LSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTG 164
            S D   + IA + K +    E +       +     +   +PT+N  +T  +V ++ TG
Sbjct: 151 KSADLVVRQIAAYNKNI----EGLINHLNSVDRMHTEAAIEKPTYNRDETAKIVKSILTG 206

Query: 163 KGLR 152
           +G+R
Sbjct: 207 EGIR 210


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 40/124 (32%), Positives = 64/124 (51%)
 Frame = -2

Query: 523 LRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKAST 344
           LRS +++  +L  E DETL   T+GRV +  H LVP+ LRTKP P+ E      + + S 
Sbjct: 91  LRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALVPEYLRTKPNPEMENEEGMLDGERSA 150

Query: 343 LSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTG 164
            S D   + IA + K +    E +       +     +   +PT+N  +T  +V ++ TG
Sbjct: 151 KSADLVVRQIAAYNKNI----EGLINHLNSVDRMHTEAAIEKPTYNRDETAKIVKSILTG 206

Query: 163 KGLR 152
           +G+R
Sbjct: 207 EGIR 210


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 484 ERDETLAHLTEGRVPACTHDLVPDLL 407
           E+D  + H  EG V  C H+++ D+L
Sbjct: 395 EKDTKICHKNEGSVATCVHEILSDVL 420


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = -2

Query: 415 DLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGES 239
           D+ R   +  ++   ++ +   ST   +TA K   QF + ++HV++  +  R+D++ +S
Sbjct: 296 DMKRVAKDLTSDWFKKKVSRGKSTAELETALKPFNQFAESMAHVFKSWNNFRDDFQTDS 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,346
Number of Sequences: 27780
Number of extensions: 228226
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)