Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c07
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   2.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.7  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   4.9  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   8.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   8.5  

>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 180 YRLNSITNVAQIICACSIKSS--ECWICNFVI*KIRETFAAPCKACDH 317
           Y LN    + +++   S +S   EC IC   +   +  F APC    H
Sbjct: 168 YNLNEFKRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSYH 215


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 194 GIQSIVGGNLSPYPAYTGINLLVPGTGSGVN 102
           GI S     +SP P Y G +L+ P TG+  N
Sbjct: 578 GIYSPATHGISPQP-YAGASLIPPSTGAAFN 607


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 526 IYEKWIYALLY*FYVH 479
           I  KWIY L + FY+H
Sbjct: 142 IMPKWIYPLFHYFYIH 157


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 344 RQEFID-PIGVIASFTRGCESF-PDFLNHEVTDPTFRTFYRACTNDLCNIGDGIQSIVGG 171
           R EF D   G+ +S  +  +   P+++ HE+  P    F   C   + +I +  QSI+  
Sbjct: 203 RYEFNDYDFGIPSSLQQSMDFLAPEYITHEIAGPESDVFSFGCL--IYSIFNKNQSIINA 260

Query: 170 N 168
           N
Sbjct: 261 N 261


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -3

Query: 570 RVHTVFTFRAFFESLSTKNGFTHCCISFMCTFWESRRSIQMLCM*FFISGFGSIVPD-NR 394
           ++ +  +F+  F  + T  G+      F      S+  + M  + F++SG+   +P  N 
Sbjct: 655 KIESFISFQGDFNEVYTSEGYAISTSGFSLWNPSSKSWVSMEKLGFYMSGYLFDIPGFNS 714

Query: 393 KQHEHRGVSIHLLHNYETR 337
            Q  + G ++  + +Y TR
Sbjct: 715 TQRIYSG-NLSAIASYSTR 732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,434
Number of Sequences: 5004
Number of extensions: 57008
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)