Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c07
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical...    29   1.9  
Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF016668-6|AAB66090.1|  275|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical
           protein F09G2.1 protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 446 YACSFSSVDSDQSCLTIGNNTNIVECPFTYCTITRQEFI--DPIGVIASFTRGCE 288
           + C+ S V  DQ C T GN+T I+  P   C       +   P+   +S+T  C+
Sbjct: 14  HLCTVSLVLCDQFCATDGNDTPIITDPNYMCNDANFTNLRNPPLQNSSSYTNNCD 68


>Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical
           protein ZC482.8 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 534 ESLSTKNG-FTHCCISFMCTFWES 466
           E LSTK G FT C IS +C  W +
Sbjct: 162 ERLSTKTGYFTICLISGLCAGWSA 185


>AF016668-6|AAB66090.1|  275|Caenorhabditis elegans Hypothetical
           protein F36H9.2 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 302 TRGCESFPDFLNHEVTDPTFRTFYRACTNDLCN---IGDGIQSIVG-GNLS 162
           +RGC +  D    E+        YR C  DLCN     D + ++ G GNLS
Sbjct: 225 SRGCINVSDGGPEELKKKGGYLLYRFCDEDLCNGEITADPVVNVEGSGNLS 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,752
Number of Sequences: 27780
Number of extensions: 333580
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)