Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c06
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   237   4e-63
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.62 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.62 
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    28   5.8  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  237 bits (580), Expect = 4e-63
 Identities = 108/183 (59%), Positives = 140/183 (76%)
 Frame = -1

Query: 560 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 381
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 380 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 201
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 200 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 21
           +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180

Query: 20  EKT 12
           EKT
Sbjct: 181 EKT 183


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 310 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 447
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = -1

Query: 443 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 279
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 278 AHF 270
            +F
Sbjct: 421 LNF 423


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 12  CFLRYIKTIQELSDILILDCSRLLDESSRARDIFQR 119
           C LR IK +  L+ +L  + SRL +  SR RD+F++
Sbjct: 28  CKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 37  SKNFLISLFLTVVDCWMRAAELETSSKELPSMISSSFCFGELTTVTPGAI 186
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 37  SKNFLISLFLTVVDCWMRAAELETSSKELPSMISSSFCFGELTTVTPGAI 186
           S   + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 459 SNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 317  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 180
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 177 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 311
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 432 NSQVFEVPFENSAGPFNCHQTRFHMDR 512
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 432 NSQVFEVPFENSAGPFNCHQTRFHMDR 512
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,231
Number of Sequences: 27780
Number of extensions: 298513
Number of successful extensions: 800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)