Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c04
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    24   5.3  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   9.3  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    23   9.3  

>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 106 TSLXNVIIGKISAISTSKINQNNXNXEK 23
           TSL N +IG  + + T+ +N  + N  K
Sbjct: 56  TSLDNFLIGGSTTLYTATVNHEDLNEPK 83


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 15  HYIFSSLXLFWLIFDVEIALIFP 83
           +Y+F     FW+I+ + + LI P
Sbjct: 313 YYVFYITSTFWIIYLLYVWLILP 335


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 220

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 59 CRNCTDFSDYYI 94
          C+NC  F+D YI
Sbjct: 29 CKNCKQFADKYI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,849
Number of Sequences: 5004
Number of extensions: 5852
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)