Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c04
         (293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-10|AAB69875.3|  381|Caenorhabditis elegans Hypothetical...    26   5.4  
Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF022967-10|AAB69875.3|  381|Caenorhabditis elegans Hypothetical
          protein C13A2.3 protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 21 IFSSLXLFWLIFDVEIALIFPIIT 92
          +FS+  L ++ F V IALIF IIT
Sbjct: 8  LFSNKALNFITFSVAIALIFIIIT 31


>Z74474-1|CAA98954.2|  566|Caenorhabditis elegans Hypothetical
           protein K10C8.1 protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   FLFHYIFSSLXLFWLIFDVEIALIFPIITLXKLV 107
           +++HY FS L   + +F  +   +FP I   KL+
Sbjct: 286 YMYHYFFSHLPANYQMFKDKFNALFPRIMDTKLL 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,475
Number of Sequences: 27780
Number of extensions: 32491
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)