Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c03
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   4.5  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   5.9  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   7.8  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    25   7.8  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   7.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.8  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   7.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   7.8  

>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 276 WIFKSFNS*GLFKLIQLWDTFDSKLGVVRHCVRGP 380
           W   S    GL++++  +DT +++ G      +GP
Sbjct: 85  WFLNSVGPDGLYRMVSAFDTKEAQAGCTFGYTKGP 119


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 341 VKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP 243
           +KGI  LDEL+KA+ +K  +   +    +R  P
Sbjct: 243 IKGILTLDELQKAIKLKQTELDKLERRLYRPSP 275


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 253 LQASFLIHGSLSPLTAKA 306
           ++ASF+ HG +SPL  +A
Sbjct: 18  IEASFVPHGKISPLIKRA 35


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 449 KSSSLIIVCEVNGNLLRMGGHGHGPPYTV 363
           K ++L +     GN L +  H H PP+++
Sbjct: 76  KEAALFVTSGTQGNQLCIRSHLHQPPHSI 104


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 455  KRKSSSLIIVCEVNGNLLRMGGHGHGPPYTVPHYS 351
            +R SS  +   ++N    RMGG G  PP++   +S
Sbjct: 1276 QRPSSGRMHGRDMNRGDSRMGGRGSNPPFSSSDWS 1310


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 258 SLISDPWIFKSFNS*GLFKLIQLWDTFDSKL 350
           + I DP++ +SF+   L KLI   +T D  L
Sbjct: 540 AFIRDPYLIESFDEEPLTKLISSLETDDPSL 570


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 55  ISTTMM*TIHNKVNALPRARDHAHVSPPPINLSRATVITVSPSPMGNPLKK 207
           +ST    + ++  N  P  +      P  +NL   +VI+  P+ +  P +K
Sbjct: 102 VSTPTAPSANHHGNPFPNGKQSIKAMPSLVNLQEDSVISKFPNSLEVPFRK 152


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 127 VSPPPINLSRATVITVSPSPMG-NPLKKNFLALCQRVPNPG*YLQASFL 270
           +SPPP++ S +   T+S S  G  PL  +F +    +     Y Q+S L
Sbjct: 454 ISPPPLSRSASISPTLSGSGSGLTPLSSHFPSAATGLVGGQVYPQSSVL 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,905
Number of Sequences: 5004
Number of extensions: 45295
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)