Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c03
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451...    28   3.3  
06_03_1164 + 28104181-28104272,28104359-28104989                       28   4.4  
05_03_0454 - 14227447-14228040                                         28   4.4  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    28   4.4  
01_05_0490 + 22672241-22674679                                         27   5.8  

>01_06_0153 -
           27044553-27044669,27044842-27044964,27045066-27045161,
           27045323-27045370,27046360-27046458,27046554-27046592,
           27047032-27047133,27047225-27047347,27047535-27047783
          Length = 331

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 109 ARDHAHVSPPPINLSRATVITVSPSPMGNPLKKNFLALCQRVPN 240
           AR  AH+ P  + L  A+  T++PSP  +P   ++  +   VP+
Sbjct: 9   ARVTAHLLPSSLPLPLASAPTLAPSPAASPASDSYRRVHGDVPS 52


>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 399 NGWSRTWAPVHSASLLPVYCQR 334
           NGW R WA   S +++ V C R
Sbjct: 146 NGWRRVWAEGDSKAVVDVVCDR 167


>05_03_0454 - 14227447-14228040
          Length = 197

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 461 IFKRKSSSLIIVCEVNGNLLRMGGHGHGPP 372
           +F R    +I   E++G L R+G  G  PP
Sbjct: 48  MFDRDGDGVITPAELSGALCRLGARGEAPP 77


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 399 NGWSRTWAPVHSASLLPVYCQR 334
           NGW R WA   S +++ V C R
Sbjct: 276 NGWRRVWAEGDSKTVVDVVCDR 297


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 377 PPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPG 240
           PP   P     +V+ +P+ +ELE  + V+ +K P   +    + PG
Sbjct: 466 PPPARPRRRSRSVESLPRTEELEAEIVVEEIKYPLPSSSPAMFPPG 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,781
Number of Sequences: 37544
Number of extensions: 318124
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)