Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c03
         (474 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-P...   101   4e-22
AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-P...    31   0.60 
AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox pro...    29   2.4  
BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p pro...    28   7.4  
AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-P...    28   7.4  
AY061622-1|AAL29170.1|  327|Drosophila melanogaster SD09326p pro...    27   9.8  

>AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-PA
           protein.
          Length = 110

 Score =  101 bits (243), Expect = 4e-22
 Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
 Frame = -2

Query: 398 MGGHGHGPPYTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP-GFGTRWQ 222
           MGGH HG PYTVPH S + V+ +PQL E+++AL  +GLKDPW+RNE WRY P  FGT   
Sbjct: 1   MGGH-HGEPYTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTHRS 59

Query: 221 RARKFFFRGFPIGLGLTVITVALDKFMGGGE 129
           R   F FRG  +G    + TVA++  +G G+
Sbjct: 60  RLNTFLFRGLGVGFCAFLATVAVEYALGIGK 90


>AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-PA
           protein.
          Length = 1988

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 85  NKVNALPRARDHAHVSPPPINLSRATVITVSPSPMGNPLKKNFLALCQRVPNP 243
           N VN LP+ R     S  P+     TV  VSPSP   P+++      Q  P P
Sbjct: 227 NLVNQLPKHRAMCVSSDSPLVNPHGTVHQVSPSPQRIPVQQTTNVFSQPYPPP 279


>AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox
           protein Scarecrow protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 147 FIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 272
           + Q+H   C+ Q+  K+  E+   + PAS+  RV  P L+ D
Sbjct: 212 WFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253


>BT010312-1|AAQ23630.1| 1482|Drosophila melanogaster AT29286p
           protein.
          Length = 1482

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 100 LPRARDHAHVSPPPINLSRATVITVSPSPMGNPL 201
           LP A   A +  PPIN    T +  +P  + +PL
Sbjct: 308 LPNAERTAGLPSPPINSRETTSVNAAPETVNSPL 341


>AE013599-2415|AAF57906.3| 1868|Drosophila melanogaster CG30460-PC,
           isoform C protein.
          Length = 1868

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 100 LPRARDHAHVSPPPINLSRATVITVSPSPMGNPL 201
           LP A   A +  PPIN    T +  +P  + +PL
Sbjct: 306 LPNAERTAGLPSPPINSRETTSVNAAPETVNSPL 339


>AY061622-1|AAL29170.1|  327|Drosophila melanogaster SD09326p
           protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 254 RYHPGFGTRWQRARKFFFRGFP--IGLGLTVITVALDKFMGGGETWAWSRARGR 99
           R H G  T +    +  F+G P  + LG+ V  + +D+  G   T  W   R R
Sbjct: 53  RLHAGLFTNYDSDVQPVFQGTPTNVSLGMVVTYIDIDELNGKLTTHCWLNLRWR 106


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,759,835
Number of Sequences: 53049
Number of extensions: 512041
Number of successful extensions: 1586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)