Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15c03
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.55 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.95 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 381 WAPVHSASLLPVYCQ 337
           WAP H+  LL VY Q
Sbjct: 298 WAPFHAQRLLAVYAQ 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 381 WAPVHSASLLPVYCQ 337
           WAP H+  LL VY Q
Sbjct: 283 WAPFHTQRLLYVYAQ 297


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 108 TRESIDFVVNCLHH 67
           T ES+D + N LHH
Sbjct: 459 TEESVDALCNTLHH 472


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 248 HPGFGTRWQRARKFFFR--GFPIGLGLTVITVALDKFMGGGETWAWSR 111
           HPGF  +  RAR+ F     F    G  + TV   +     ET  W+R
Sbjct: 199 HPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTE----TETETWTR 242


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 167 ITVALDKFMGGGETWAWSRARGRA 96
           +   + +   GG+TW+ S+ +G A
Sbjct: 894 VPYGMQRGQSGGQTWSNSQVQGVA 917


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 392 GHGHGPPYTVPHY 354
           GHGH   +  PH+
Sbjct: 420 GHGHSHIHATPHH 432



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 195 SSKEEFSGSLPASAKSRVISPSLISDPWIFKS 290
           S+ E F G+ P +   +     L   P IFKS
Sbjct: 115 SADEGFDGTYPTNVVVKNNGTCLYVPPGIFKS 146


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 381 WAPVHSASLLPVY 343
           WAP H   LL VY
Sbjct: 273 WAPFHVQRLLYVY 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,165
Number of Sequences: 438
Number of extensions: 3230
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)