Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c02
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 144 1e-35
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 41 3e-04
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 30 0.47
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 29 0.83
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 2.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 3.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 4.4
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 26 5.8
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 26 5.8
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 5.8
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 26 5.8
SPAC6G10.03c |||abhydrolase family protein, unknown biological r... 26 5.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 7.7
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 144 bits (349), Expect = 1e-35
Identities = 96/276 (34%), Positives = 131/276 (47%), Gaps = 4/276 (1%)
Frame = -1
Query: 838 FSYQVGVXVXSRDSNYPVGTRVVAHKGWCDHYVFTPSTQPN--TPKDRIYKLPDLQGLSP 665
++ V V S Y G VV GW + Y F P + YKLP +
Sbjct: 82 YNSTVAKVVKSTLDQYKPGMDVVFVSGW-EEYTFVSKQALGFLQPINNPYKLPLIDF--- 137
Query: 664 SLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXXXGSLVGQIAKIKGCRVIGFAGT 485
VG++GMP TAY G I KPK G + GQ+AK G V+G G+
Sbjct: 138 ---VGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGS 194
Query: 484 DDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEISSQIISKMNVYGR 305
D+K K + G+D FNYK AL P GID YF+NVGGE ++ MN+ GR
Sbjct: 195 DEKFKICLDS-GYDSVFNYKKESPFKALPRLCPKGIDIYFENVGGETMDAVLENMNLQGR 253
Query: 304 VSVCGSISAYNEDLTKLPKATILQPSLVFNQIKVEGFLVWRW--NDQSKAFAEIIPWIQS 131
+ CG+IS YN P ++ + ++GF+V Q + F E+ I
Sbjct: 254 IIFCGAISQYN---NPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAE 310
Query: 130 GKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVKV 23
GK+K K V +G + +AFIGML G+N GK +VK+
Sbjct: 311 GKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKI 346
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -1
Query: 535 GQIAKIKGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDN 359
G+ A+I G +VIG ++++ ++ GF + DVP + E NG+DC +
Sbjct: 238 GRWAQILGASKVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDCAIEA 297
Query: 358 VGGEISSQIISKM 320
G S+ I+ K+
Sbjct: 298 SGFRFSTSILHKV 310
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.47
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 394 AAPNGIDCYFDNVGGEISSQIISKMNVYG-RVSVCGSISAYNEDLTKLPKATILQPSLVF 218
A PN I YFDNV EI ++ K+N G +V+ + + T+ + QP+ V
Sbjct: 127 AFPNFI-FYFDNVDEEIKRRVTQKINNLGAKVATLFTFEVTHFITTRTTDPEMCQPNDVL 185
Query: 217 NQIKVEGFLVW 185
K +W
Sbjct: 186 YLSKTANMKIW 196
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 29.1 bits (62), Expect = 0.83
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Frame = -1
Query: 382 GIDCYFDNVGGEISSQIISKMNVYGRVSVCGSISAYNEDLTKLPKATILQPSLVFNQIKV 203
GIDC V G +++++ M+ ++ G +S LP L L+F +K
Sbjct: 254 GIDC----VSGRVAAEMAKYMSKGATMATFGGMSRQ-----PLPVPVSL---LIFKNLKF 301
Query: 202 EGFLVWRW-NDQSKAFAEII----PWIQSGKLKV--KEHVT---EGFDKLF-DAFIGMLA 56
GF V +W ++ + F +II + ++G LK E V+ + +K F D F+ +
Sbjct: 302 HGFWVTKWKSEHPEEFLKIIHKVEDFYRNGTLKTVNTELVSLKEDADEKTFLDTFLNAI- 360
Query: 55 GENYGKAVVK 26
E +GK ++K
Sbjct: 361 -EGHGKKIIK 369
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -1
Query: 262 TKLPKATILQPSLVFNQIKVEGFLVWRWNDQSKAFAEIIPWIQSGKLKVKEHV--TEGFD 89
TK+P T+ S + +++VEG W + ++ A+ W+ + KE++ TE D
Sbjct: 501 TKIPLLTVKSVSYIIEKMEVEGVDSWFNDTENNGHAQ---WVHP-DYRNKEYIRGTETLD 556
Query: 88 KLFDA 74
FD+
Sbjct: 557 VWFDS 561
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.3
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = -1
Query: 481 DKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEISSQIISKMNVYGRV 302
D +K++EE+ D F+ + GI YF ++ E++ Q + +N R
Sbjct: 519 DFIKYIEEDQA-DTFFHEMSEKFKGCKLILLLEGIPNYFKSLKAELNRQYAAAVNSGTRP 577
Query: 301 SVCGSISAYNEDLTK 257
+ GS+S Y ++ TK
Sbjct: 578 LLFGSLSKY-QNFTK 591
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 290 ATDGDPPVNVHFANYLTADFTADIVEI 370
ATD DPP+ +H ++ D T + EI
Sbjct: 211 ATDKDPPLYLHIVSHNRKDLTVALQEI 237
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 496 FAGTDDKVKWLEEEL 452
F+ +DD+V WLEE+L
Sbjct: 542 FSNSDDRVAWLEEQL 556
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 347 FTADIVEITVYPVRGSFLECCRYIYCF 427
FT D ++I ++ V G E ++IYCF
Sbjct: 187 FTLDHLQIRMFDVGGQRTERRKWIYCF 213
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 169 SKAFAEIIPWIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENY 44
S AF+ + + K +V E ++ FD+ F + +L ENY
Sbjct: 178 SDAFSTFKSILLNHKSQVAEFISYHFDEFFKQYTVLLKSENY 219
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 268 DLTKLPKATI-LQPSLVFNQIKVEGFLVWR 182
+ TKL K+ I +LVF I V GF+ WR
Sbjct: 292 NFTKLEKSIIGAFAALVFKDIFVYGFIAWR 321
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 736 TPSTQPNTPKDRIYKL-PDLQGLSPSLGVGAVG 641
TP QP PK R ++L PDL ++ G ++G
Sbjct: 148 TPKPQPGNPKPRYFRLKPDLSVIN-RYGFNSIG 179
>SPAC6G10.03c |||abhydrolase family protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 511 CRVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDN 359
CR I G D W+++ G + K +++ A + G CY DN
Sbjct: 357 CRTIFMYGDKD---WMDDVAGLEATNRLKEMNIEAEHHIISNAGHHCYLDN 404
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = -1
Query: 259 KLPKATILQPSLVFNQIKVEGFLVWRWNDQSKAFAEIIPWIQSGKLKVKEHVTEGFDKLF 80
K P + L+ +L NQ V+ + +++ ++ ++ ++S +V + FDK
Sbjct: 2729 KSPNSCALEFALDINQDSVQ-LIRLTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCI 2787
Query: 79 DAFIGMLA 56
+AFI MLA
Sbjct: 2788 EAFISMLA 2795
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,276,733
Number of Sequences: 5004
Number of extensions: 65617
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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