Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15c02
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46935-8|CAL36511.1| 365|Caenorhabditis elegans Hypothetical pr... 151 8e-37
Z46935-7|CAL36510.1| 373|Caenorhabditis elegans Hypothetical pr... 151 8e-37
Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z82081-5|CAB04958.1| 344|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 28 9.6
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 28 9.6
>Z46935-8|CAL36511.1| 365|Caenorhabditis elegans Hypothetical
protein M106.3b protein.
Length = 365
Score = 151 bits (365), Expect = 8e-37
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 5/227 (2%)
Frame = -1
Query: 691 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXGSLVGQIAKI 518
LP + SPS+ + G+ G TA G + + GSL GQIA+I
Sbjct: 138 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 197
Query: 517 KGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEIS 341
+GC +VIG G+DDK L+ E GF+ NYKT +V L AP GID Y+DNVGG IS
Sbjct: 198 EGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVIS 257
Query: 340 SQIISKMNVYGRVSVCGSISAYNEDLTKLPKATILQPSLVFNQ-IKVEGFLVWRWNDQ-S 167
+I MN GRV +CG I+ YN DL P ++ + I+ E +LV + D+
Sbjct: 258 DDVIRAMNNEGRVVLCGQIAVYNTDLPYPPPLPEHTTKIIKERNIQRERYLVLMYKDEID 317
Query: 166 KAFAEIIPWIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVK 26
+A A++ W+Q K+KVKE + +G + AF+ M+ G+N GK +++
Sbjct: 318 EAVAQLSEWLQQDKIKVKETIYDGLNAAPSAFVDMMNGKNIGKMLIR 364
>Z46935-7|CAL36510.1| 373|Caenorhabditis elegans Hypothetical
protein M106.3a protein.
Length = 373
Score = 151 bits (365), Expect = 8e-37
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 5/227 (2%)
Frame = -1
Query: 691 LPDLQGLSPSLGVGAVGMPGATAYFGFLE--ICKPKXXXXXXXXXXXXXXGSLVGQIAKI 518
LP + SPS+ + G+ G TA G + + GSL GQIA+I
Sbjct: 146 LPSSRNFSPSVILSCAGLSGITALLGIRKKALIDRSRPQTIVVSGAAGSCGSLAGQIARI 205
Query: 517 KGC-RVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVGGEIS 341
+GC +VIG G+DDK L+ E GF+ NYKT +V L AP GID Y+DNVGG IS
Sbjct: 206 EGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNVGGVIS 265
Query: 340 SQIISKMNVYGRVSVCGSISAYNEDLTKLPKATILQPSLVFNQ-IKVEGFLVWRWNDQ-S 167
+I MN GRV +CG I+ YN DL P ++ + I+ E +LV + D+
Sbjct: 266 DDVIRAMNNEGRVVLCGQIAVYNTDLPYPPPLPEHTTKIIKERNIQRERYLVLMYKDEID 325
Query: 166 KAFAEIIPWIQSGKLKVKEHVTEGFDKLFDAFIGMLAGENYGKAVVK 26
+A A++ W+Q K+KVKE + +G + AF+ M+ G+N GK +++
Sbjct: 326 EAVAQLSEWLQQDKIKVKETIYDGLNAAPSAFVDMMNGKNIGKMLIR 372
>Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical
protein F39B2.3 protein.
Length = 328
Score = 39.9 bits (89), Expect = 0.002
Identities = 34/148 (22%), Positives = 64/148 (43%)
Frame = -1
Query: 730 STQPNTPKDRIYKLPDLQGLSPSLGVGAVGMPGATAYFGFLEICKPKXXXXXXXXXXXXX 551
ST +R ++LP+ G+S G ++G+P TAY + K
Sbjct: 102 STAEYVAVNRPFELPE--GVSFEEGA-SLGVPYLTAYRALFHLAGAKTGDVILVHGASGG 158
Query: 550 XGSLVGQIAKIKGCRVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDC 371
GS + Q+A + +G AG+ D ++++ + LG +N+ + +K P G +
Sbjct: 159 VGSALMQLAAWRNIEAVGTAGSADGIRFV-KSLGARNVYNHSDKQYVSKMKNDYPGGFNH 217
Query: 370 YFDNVGGEISSQIISKMNVYGRVSVCGS 287
F+ + + + GRV+V G+
Sbjct: 218 IFEMAAHTNLNTDLGLLAPRGRVAVIGN 245
>Z82081-5|CAB04958.1| 344|Caenorhabditis elegans Hypothetical
protein W09H1.5 protein.
Length = 344
Score = 39.5 bits (88), Expect = 0.003
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Frame = -1
Query: 532 QIAKIKGCRVIGFAGTDDKVKWLEEELGFDKAFNYKTVDVPAALKEAAPNGIDCYFDNVG 353
QI +I G + + + D ++ L +EL A T + + K+ P G+ + VG
Sbjct: 177 QICRILGIKTVNVVRSRDNLEELVKELKDLGADEVITQEELYSRKKKFP-GVKLALNCVG 235
Query: 352 GEISSQIISKMNVYGRVSVCGSISAYNEDLTKLPKATILQPSLVFNQIKVEGFLVWRWND 173
G S + S ++ G + G +S D P L+F I + GF + RW D
Sbjct: 236 GRSSLFLASLLDHGGCMVTYGGMSKQPVDCPTGP--------LIFKDISLRGFWMSRWYD 287
Query: 172 QSKA-------FAEIIPWIQSGKLKVKEHV 104
K+ + E+ W++SG++K +E V
Sbjct: 288 IQKSPEKRHEMYQELAGWMKSGEIKKQEIV 317
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 604 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 708
F RN N PA P + P A AT A+L Y+Y P
Sbjct: 574 FFRNHNTLGEPAQDPAVWPSVAAATKIANLFRYQYLP 610
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 604 FLRNQNRQSRPASQPPLRP--ATATIPADLVVYKYDP 708
F RN N PA P + P A AT A+L Y+Y P
Sbjct: 641 FFRNHNTIGAPAQDPAVWPSVAAATKKANLFRYQYLP 677
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,580
Number of Sequences: 27780
Number of extensions: 370834
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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