Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b15
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   224   1e-59
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    29   0.80 
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   2.4  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    27   3.2  
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    27   3.2  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    27   4.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   5.6  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    26   5.6  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   7.4  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  224 bits (548), Expect = 1e-59
 Identities = 108/181 (59%), Positives = 138/181 (76%)
 Frame = -3

Query: 783 QCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSK 604
           Q F  WY   PGLKV+ PYSAEDA+GLLKAAIRDP+PVV+LE+EI+YG  FP+S EA S+
Sbjct: 165 QHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSE 224

Query: 603 DFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDT 424
           DFVLP G AKVER G+ IT+V       TAL+AA++L    G+E EV+NLR+IRP+D +T
Sbjct: 225 DFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINT 284

Query: 423 IARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPVWRVCGADVPMPYARTL 244
           IA S+ KT+ ++TV+Q + Q GIG+EI A++MES +F  LDAPV RV  ADVPMPY+  +
Sbjct: 285 IAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPV 344

Query: 243 E 241
           E
Sbjct: 345 E 345


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 405 KTHHLITVEQGWP---QSGIGAEICARVMESPSFFEL 304
           K H L+  ++GWP   +SG+G ++  +  +   FFE+
Sbjct: 222 KRHVLVQPQEGWPPLVRSGLGMKLTGQSQDLECFFEI 258


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 403 FGNGPSDRVEIHWPYCS*IYYFTFYTL 483
           +G G S  +E ++ YCS I+Y+   TL
Sbjct: 759 YGWGASSEMECYFSYCSLIFYYQATTL 785


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 565 GGSAYHASVRWTRHRHRAQGR*TTGWKQGYRM 470
           G +A+  S+RW    HRA  R T   K  Y +
Sbjct: 132 GAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNV 163


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 666 MLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVEREGRHITLV 541
           M +  +M GIPFP + E  ++  V   G  ++  +G+H  ++
Sbjct: 201 MTDGGVMMGIPFPQAQELAAQTMV---GTGRMVLQGQHPAMI 239


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +2

Query: 143 DSLFYWACTAL 175
           D+LF+WACTAL
Sbjct: 34  DNLFHWACTAL 44


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 278 PHTRHTGASSSKNDGDSMTRAQISA 352
           PH+RHT   +    G S++R   SA
Sbjct: 45  PHSRHTSTVAGTEGGSSLSRRHTSA 69


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 587 IGSTKSLDWA-SSDIGNGIP 643
           + S+KSLDWA   D G G+P
Sbjct: 1   MSSSKSLDWADDEDYGTGLP 20


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  IKYVQIIRTLLIYICLWRFPVLLGLHCTDFVAE 189
           I+Y+     L I  CL  FP+LL ++ T+ V E
Sbjct: 90  IRYLFTFGALCILGCLVLFPILLPVNATNGVGE 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,833
Number of Sequences: 5004
Number of extensions: 58695
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)