Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b15
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 228 5e-60
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 213 1e-55
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 120 1e-27
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 116 2e-26
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 116 2e-26
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 45 6e-05
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 43 3e-04
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 41 0.001
10_08_0440 + 17930970-17931297,17931682-17931905,17932439-179324... 30 2.6
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450... 29 4.5
03_01_0393 - 3062859-3062972,3063027-3063311,3063472-3063759,306... 29 4.5
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473... 29 5.9
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 28 7.8
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 228 bits (557), Expect = 5e-60
Identities = 109/181 (60%), Positives = 137/181 (75%)
Frame = -3
Query: 783 QCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSK 604
QC+ AWY+H PGLKVL+PYSAEDA+GLLKAAIRDPDPVV LE+E++YG FP+S E
Sbjct: 170 QCYAAWYAHVPGLKVLVPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISAEVLDS 229
Query: 603 DFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDT 424
F LPIGKAK+EREG+ +T+ + AL+AA+ L+ +GI EV+NLR+IRP+D T
Sbjct: 230 SFALPIGKAKIEREGKDVTITAYSKMVGYALQAADILS-KEGISAEVINLRSIRPLDRAT 288
Query: 423 IARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPVWRVCGADVPMPYARTL 244
I S+ KT+ L+T+E+ +PQ GIGAEIC V+E SF LDAPV R+ GADVPMPYA L
Sbjct: 289 INASVRKTNRLVTIEESFPQHGIGAEICMSVVEE-SFEYLDAPVERIAGADVPMPYAANL 347
Query: 243 E 241
E
Sbjct: 348 E 348
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 213 bits (520), Expect = 1e-55
Identities = 106/195 (54%), Positives = 135/195 (69%), Gaps = 14/195 (7%)
Frame = -3
Query: 783 QCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSK 604
QC+ AWY+H PGLKVL PYSAEDA+GLLKAAIRDPDPVV LE+E++YG FP+S E
Sbjct: 150 QCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDS 209
Query: 603 DFVLPIGKAKVEREGRHITLVCAGRGTDTALK--------------AAEQLAGSKGIECE 466
F LPIGKAK+E+EG+ +T+ + AL+ A ++ +GI E
Sbjct: 210 SFCLPIGKAKIEQEGKDVTITAFSKMVGYALQDVREPQMKEKDVKFQAAEILSKEGISAE 269
Query: 465 VVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICARVMESPSFFELDAPVWR 286
V+NLR+IRP+D TI S+ KT+ L+T+E+G+PQ G+GAEIC V+E SF LDAPV R
Sbjct: 270 VINLRSIRPLDRATINASVRKTNRLVTLEEGFPQHGVGAEICMSVVED-SFEYLDAPVER 328
Query: 285 VCGADVPMPYARTLE 241
+ GADVPMPYA LE
Sbjct: 329 IAGADVPMPYAANLE 343
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 120 bits (290), Expect = 1e-27
Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
Frame = -3
Query: 744 KVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSKDFVLPIGKAKVER 565
+V++P S +AKGLL A+IRDP+PVV E + +Y + +E +D++LP+ +A+V R
Sbjct: 251 QVIIPRSPREAKGLLLASIRDPNPVVFFEPKWLYRLAV---EEVPEEDYMLPLSEAEVIR 307
Query: 564 EGRHITLVCAGRGTDTA-LKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLI 388
+G ITL+ G G A L+ A + A GI CE+++LRT+ P D +T+ S++KT L+
Sbjct: 308 KGSDITLI--GWGAQLAVLEEACEDAAKDGISCELIDLRTLIPWDKETVEASVSKTGKLL 365
Query: 387 TVEQGWPQSGIGAEICARVMESPSFFELDAPVWRVCGADVPMP 259
+ G GAEI A + E F L+APV RVCG D P P
Sbjct: 366 VSHEAPITGGFGAEIAASITER-CFQRLEAPVARVCGLDTPFP 407
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 116 bits (280), Expect = 2e-26
Identities = 62/178 (34%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Frame = -3
Query: 771 AWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSKDFVL 592
+++ PGL+++ + +AKGL+KAAIR +PVV+ E ++Y + + DE +++
Sbjct: 187 SYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDE----EYIC 242
Query: 591 PIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARS 412
+ +A++ R G H+T++ R ++AA+ L +KG + EV+++R+++P D TI S
Sbjct: 243 CLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLV-NKGYDPEVIDIRSLKPFDLHTIGNS 301
Query: 411 IAKTHHLITVEQGWPQSGIGAEICARVMESPSFFE-LDAPVWRVCGADVPMPYARTLE 241
I KTH ++ VE+ GIGA + + +++ +F++ LDAP+ + DVP PYA TLE
Sbjct: 302 IKKTHRVLIVEECMRTGGIGASLRSAIID--NFWDYLDAPIMCLSSQDVPTPYAATLE 357
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 116 bits (280), Expect = 2e-26
Identities = 63/178 (35%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Frame = -3
Query: 771 AWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPFPMSDEAQSKDFVL 592
+++ PGL+++ + +AKGL+KAAIR +PVV+ E ++Y + + DE ++VL
Sbjct: 204 SYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKIPDE----EYVL 259
Query: 591 PIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARS 412
+ +A++ R G H+T++ R ++AA+ L +KG + EV+++R+++P D TI S
Sbjct: 260 CLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLV-NKGYDPEVIDIRSLKPFDLHTIGNS 318
Query: 411 IAKTHHLITVEQGWPQSGIGAEICARVMESPSFFE-LDAPVWRVCGADVPMPYARTLE 241
I KTH ++ VE+ GIGA + + +++ +F++ LDAP+ + DVP PYA LE
Sbjct: 319 IKKTHRVLIVEECMRTGGIGASLRSAIID--NFWDYLDAPIMCLSSQDVPTPYAAPLE 374
>05_04_0284 - 19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 45.2 bits (102), Expect = 6e-05
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 4/149 (2%)
Frame = -3
Query: 777 FGAWYSHC-PGLKVLMPYSAEDAKGLLK--AAIRDPDPVVMLEDEIMYGIPFPMSDEAQS 607
F Y C P + V+ P + ++ AAI D G+P P +
Sbjct: 676 FDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPN----Y 731
Query: 606 KDFVLPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFD 427
K L +GK +V EG + L+ G L AA L G++ V + R +P+D
Sbjct: 732 KGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAAS-LVERHGLKVTVADARFCKPLD-Q 789
Query: 426 TIARSIAKTHH-LITVEQGWPQSGIGAEI 343
T+ R +A +H L+TVE+G G G+ +
Sbjct: 790 TLIRRLASSHEVLLTVEEG-SIGGFGSHV 817
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 42.7 bits (96), Expect = 3e-04
Identities = 28/84 (33%), Positives = 40/84 (47%)
Frame = -3
Query: 594 LPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIAR 415
L IGK ++ EG+ I + G L A L + GI+ V N R +P+D D I
Sbjct: 376 LEIGKGEILAEGKEIAFLGYGDVVQRCL-IARSLLFNFGIQATVANARFCKPLDIDLIRM 434
Query: 414 SIAKTHHLITVEQGWPQSGIGAEI 343
+ LITVE+G G G+ +
Sbjct: 435 LCQQHDFLITVEEG-TVGGFGSHV 457
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = -3
Query: 594 LPIGKAKVEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIAR 415
L +GK +V G + L+ G +KAAE L GI V + R +P+D I
Sbjct: 567 LEVGKGRVLVGGNRVALLGYGTMVQACMKAAEALK-EHGIYVTVADARFCKPLDTGLIRE 625
Query: 414 SIAKTHHLITVEQGWPQSGIGAEI 343
A+ L+TVE+G G G+ +
Sbjct: 626 LAAEHEVLVTVEEG-SIGGFGSHV 648
>10_08_0440 +
17930970-17931297,17931682-17931905,17932439-17932465,
17933747-17934340
Length = 390
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 513 LKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARSIAKTHHLITVEQGWPQSGIGAEICA 337
L ++G+ I E + + + F I RS+ T ++ ++ WP+ G A I A
Sbjct: 238 LTRISNISGTHLINKEYTSKLSTLELTFGYIVRSVEATINVRVIDGSWPEEGFSARITA 296
>07_03_1217 -
24943466-24943828,24944207-24944374,24944941-24945009,
24945091-24945197,24945846-24945980,24946090-24946195,
24946758-24946794,24949795-24949832
Length = 340
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 263 MGTSAPHTRHTGASSSKNDGDSMTRAQISAPIPDCGHP 376
M S+P+ RHT S +DG M + + G+P
Sbjct: 91 MNDSSPNERHTSTQSDNDDGHQMPDQDKTKSVSSLGNP 128
>03_01_0393 -
3062859-3062972,3063027-3063311,3063472-3063759,
3063844-3064161,3064232-3064415,3064504-3064659,
3066394-3066620,3066734-3066804,3067090-3067534
Length = 695
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 556 PTLPFYLSFANRKYKV 603
PTLP YL FA KYKV
Sbjct: 165 PTLPIYLKFAEVKYKV 180
>11_01_0595 +
4732330-4732723,4732839-4732903,4733023-4733143,
4733596-4733687,4733850-4733915,4734106-4734125,
4734147-4734239,4734358-4734445,4734570-4734635,
4734728-4734843,4735410-4735500,4736133-4736234,
4736342-4736425,4736551-4736643,4736728-4736823,
4736914-4736999,4737528-4737606,4737675-4737788,
4737890-4737985,4738060-4738123,4738221-4738510,
4738901-4738956,4739060-4739177,4739287-4739367,
4739683-4739762,4740001-4740055,4740142-4740211,
4740279-4740468,4740567-4740690,4741055-4741129,
4741217-4741390
Length = 1112
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 537 AGRGTDTALKAAEQLAGSKGIECEVVNLRTIRPMDFDTIARS 412
AGRGTD L ++ + IE V+ T P D +T+ S
Sbjct: 609 AGRGTDIILGGNPKMLAKEIIEDNVLPFLTHEPPDVETVGES 650
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 278 PH-TRHTGASSSKNDGDSMTRAQISAP 355
PH R G SSS DG+S+ A S+P
Sbjct: 107 PHRARENGVSSSSRDGESVVAASASSP 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,757,381
Number of Sequences: 37544
Number of extensions: 429414
Number of successful extensions: 985
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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