Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b15
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   4.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.5  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   4.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   4.5  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   4.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = -3

Query: 573 VEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRT-IRPMDFDTIARSIAKT- 400
           VER  +H+ L C  +G  T     ++  GSK  E E +  R   + +   T+     K  
Sbjct: 721 VERN-KHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKED 779

Query: 399 ---HHLITVEQGWPQSGIGAEICARVMESPSF 313
               +L     G   SGIG  +  +V  SP F
Sbjct: 780 REGFYLCQASNG-IGSGIGKVVQLKVNSSPYF 810


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = -3

Query: 573 VEREGRHITLVCAGRGTDTALKAAEQLAGSKGIECEVVNLRT-IRPMDFDTIARSIAKT- 400
           VER  +H+ L C  +G  T     ++  GSK  E E +  R   + +   T+     K  
Sbjct: 717 VERN-KHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGTLLLQHVKED 775

Query: 399 ---HHLITVEQGWPQSGIGAEICARVMESPSF 313
               +L     G   SGIG  +  +V  SP F
Sbjct: 776 REGFYLCQASNG-IGSGIGKVVQLKVNSSPYF 806


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 406 QNTSSHYCRTRMAAIWNRRRDLRPR 332
           Q+TSSHY R R  +  +R R+ R +
Sbjct: 225 QHTSSHYSRERSCS-RDRNREYRKK 248


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 406 QNTSSHYCRTRMAAIWNRRRDLRPR 332
           Q+TSSHY R R  +  +R R+ R +
Sbjct: 225 QHTSSHYSRERSCS-RDRNREYRKK 248


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 406 QNTSSHYCRTRMAAIWNRRRDLRPR 332
           Q+TSSHY R R  +  +R R+ R +
Sbjct: 225 QHTSSHYSRERSCS-RDRNREYRKK 248


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 406 QNTSSHYCRTRMAAIWNRRRDLRPR 332
           Q+TSSHY R R  +  +R R+ R +
Sbjct: 225 QHTSSHYSRERSCS-RDRNREYRKK 248


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 406 QNTSSHYCRTRMAAIWNRRRDLRPR 332
           Q+TSSHY R R  +  +R R+ R +
Sbjct: 214 QHTSSHYSRERSCS-RDRNREYRKK 237


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 723 AEDAKGLLKAAIR 685
           AEDA+G+L+AA R
Sbjct: 206 AEDARGILEAARR 218


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 723 AEDAKGLLKAAIR 685
           AEDA+G+L+AA R
Sbjct: 296 AEDARGILEAARR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,134
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)