Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b14
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0379 + 33505242-33505347,33505474-33505631,33506127-335061...    30   1.8  
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877...    28   9.4  

>03_06_0379 +
           33505242-33505347,33505474-33505631,33506127-33506174,
           33506851-33506919
          Length = 126

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 348 LTQHCKYFINTNNNSFLRLHLKSLSNMI-KYFLTTTQLYS-EH*FNIK 485
           L+   ++F+N   N   RLH++++S+ + KY L    LY  +H  +IK
Sbjct: 5   LSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIK 52


>04_04_0158 -
           23187070-23187264,23187347-23187477,23187550-23187763,
           23187834-23187932,23188034-23188156,23188247-23188366,
           23188447-23188506,23188592-23188884,23189554-23189707,
           23189813-23190130,23190668-23190798,23191001-23191586,
           23192125-23192739
          Length = 1012

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 578 CLSESGSTSELTHRHSPLSFSPDLLSGSRFRSGGRF 685
           CL+ES STS  +   SPLS S    S S   SG +F
Sbjct: 820 CLTESTSTSSESTHQSPLSSSVMHNSDSHRVSGSKF 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,091,774
Number of Sequences: 37544
Number of extensions: 279819
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)