Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b14
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-29|CAI79284.1|  109|Caenorhabditis elegans Hypothetical...    28   8.4  
AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine re...    28   8.4  

>AL132862-29|CAI79284.1|  109|Caenorhabditis elegans Hypothetical
           protein Y73F8A.36 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 178 YF*TQC-RLIKSTKTELSGNKNNNTIKCMQK 89
           +F T+C R +   K   S +KN  TI+C+QK
Sbjct: 66  FFETRCPRKVACLKVNKSTHKNPKTIRCLQK 96


>AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein111 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -3

Query: 468 VHYIIVSLLKNILSCLIEILNVSVKMNYYLCL*SICSAVSDVV*SVKI*-RNGIIFKYY* 292
           +HYI+ S   + L  ++ +   S  MN ++ +    S+ +  + +     R   + + + 
Sbjct: 169 IHYILQS---DFLFLVLPLAVFSNVMNVFIAIKLFLSSKTQNLSTESCRHRQKTLIRLFI 225

Query: 291 LVCNNDFAVIGKCVASLFFKNNLSHVSLVIAITV 190
             C  D+  +   V SLFF+N  +H  L+  +T+
Sbjct: 226 QNCFEDWVYVLDTVNSLFFRNTANHPFLIFIVTL 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,176
Number of Sequences: 27780
Number of extensions: 313682
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)