Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b11
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0164 - 6066744-6067637 31 0.83
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 31 1.1
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 3.4
02_02_0712 + 13200174-13200761,13201966-13202616 29 3.4
07_01_0895 + 7506460-7507929 29 4.4
03_03_0094 + 14378953-14380728 29 4.4
10_01_0105 + 1287423-1289924 29 5.9
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 5.9
01_06_0397 + 29017608-29018510,29018751-29019083 29 5.9
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 28 7.8
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 28 7.8
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 7.8
>03_02_0164 - 6066744-6067637
Length = 297
Score = 31.5 bits (68), Expect = 0.83
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 684 CRCCGPHLPGSQ-VRLHGQAHERQRQTPRHVR-----AGQLYVQTGQRKEHHRP*LHGYA 523
C C H P SQ + H AH+R+RQ + V+ A +G HH L GY
Sbjct: 103 CHYCCRHFPTSQALGGHQNAHKRERQHAKRVQMQTAMAAAAAAASGAHHHHHHHQLLGYP 162
Query: 522 RIYPR 508
+ + R
Sbjct: 163 QHHHR 167
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = -2
Query: 753 YGPHAPPQSPSVPGVD*CHVRQNCRCCGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYV 574
YGPH + S V +R+ R +R R+R+ PR R + V
Sbjct: 32 YGPHVSDTTASCTRVRRSRLREFARDRFRDPFNPDLRRREPRRRRRRRAPRRRRKAMMPV 91
Query: 573 QTGQRKEHH-RP*LHGYARIYPRV 505
+T HH H RI PRV
Sbjct: 92 RTYHHHHHHNNSNNHRLRRIIPRV 115
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 324 TGADRRHDDVHLHLQTSNRTEG-QHKSLRESVARLAPPVLDHCLAISGRHHFA 479
T A ++ D+HLH+ TS T G + + LR R PV D L+ S R + A
Sbjct: 180 TVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMA 232
>02_02_0712 + 13200174-13200761,13201966-13202616
Length = 412
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 156 FSVDHYVSELHVVSEEARHVNRSVKWISERHGG 254
++ +HY+ + +R NRSV W+ HGG
Sbjct: 317 YADEHYLPTFLGIRHPSRVTNRSVTWVDWSHGG 349
>07_01_0895 + 7506460-7507929
Length = 489
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 165 LQKRPRHVEHQQDRGHLGDGH---DEGRSHLPGSRTCWSRGLTKTS 37
LQ R + H + RGH GH D+ ++ LP R SRG +S
Sbjct: 30 LQPRRTPISHLRRRGHDATGHDATDDDKAVLPLRRLIGSRGYASSS 75
>03_03_0094 + 14378953-14380728
Length = 591
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = -3
Query: 515 IPEYLSTRRVMESEMMPSGDGQTMVKDWWCKSRNGFPQRLMLPLGTIGGLEMQMYVIVSP 336
+ L R + ES+++ + + W + + L + LG + G+ M +
Sbjct: 208 VKRQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQEL-RR 266
Query: 335 VRTGMLLPTLDMTMMKDRCACRWS 264
VR+G+L T +M M D RW+
Sbjct: 267 VRSGILGETDNMVTMHDVMDARWA 290
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = -3
Query: 818 DISNAMYLDATEMQN--KTSDMTFMARMRRLNH 726
++SN YLD +EMQN ++D+++++R+ L +
Sbjct: 179 NLSNLRYLDVSEMQNVVYSTDLSWLSRLHLLEY 211
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 412 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 519
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>01_06_0397 + 29017608-29018510,29018751-29019083
Length = 411
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 522 LHIHGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEPAHAVVLGTQEDADHSIDSFVGHD 701
+H+H T L +D ++ + + F+ HEP V+ + ADH ID V
Sbjct: 76 MHVHATTS---LKMDMSGSLSIIVGQLLPFL---HEPFRQVLKRLRWTADHEIDR-VNLT 128
Query: 702 INRHLERMVIEAAHA 746
+ R L+R+V E A
Sbjct: 129 LGRQLDRIVAERTAA 143
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 28.3 bits (60), Expect = 7.8
Identities = 37/141 (26%), Positives = 46/141 (32%), Gaps = 7/141 (4%)
Frame = +3
Query: 273 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCL 452
T+ H GH C D + D H H +H + +E + L PP DH
Sbjct: 802 TNKHACHDGHNHCADTSNLHDTKKHDCHGH---------EHSTCKEELNAL-PPTNDH-- 849
Query: 453 AISGRHH------FAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQFVHKAVQLEHV-EAF 611
A G H A H T + HIH G D+ H E V E
Sbjct: 850 ACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEPIGSHCADK--HACHDHEQVHEHH 907
Query: 612 VVDAHEPAHAVVLGTQEDADH 674
D + H L D DH
Sbjct: 908 CCDEQQTPHTADLHPCHDHDH 928
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 28.3 bits (60), Expect = 7.8
Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Frame = +3
Query: 267 PATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDH 446
P S VL HV CG H R+ DV + S G H + +SV L
Sbjct: 70 PLESRLVLDVYHVDCGVRHAALVTRNGDVFTWGEDSGGRLG-HGTREDSVHPRLVESLAA 128
Query: 447 C---LAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDG 551
C G H TT W H G G
Sbjct: 129 CNVDFVACGEFHTCAVTTTGELYTWGDGTHNVGLLGHG 166
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 399 SLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKS 521
S + + + VLD + HH A YT S + LW S
Sbjct: 693 SAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQAS 733
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,621,929
Number of Sequences: 37544
Number of extensions: 572095
Number of successful extensions: 1888
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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