Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b11
(820 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 31 0.99
AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical ... 30 1.7
U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical pr... 30 2.3
AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 30 2.3
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 29 4.0
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 28 7.0
U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 28 7.0
U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 28 7.0
U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 28 7.0
Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 28 9.2
U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 28 9.2
U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 28 9.2
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.1 bits (67), Expect = 0.99
Identities = 54/230 (23%), Positives = 65/230 (28%), Gaps = 2/230 (0%)
Frame = +3
Query: 99 HHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRSVKWISERHGGDT*APATS 278
HH+H G H H E + E H H HG APA
Sbjct: 381 HHEHKEGEHHEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGH-HGEHHHAPA-- 437
Query: 279 TTVLHHGHVQC-GQ-EHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCL 452
HHGH + G H+ A H H H + G+H H
Sbjct: 438 ----HHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHH-- 491
Query: 453 AISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEP 632
G HH H+ + H H G + H EH A H
Sbjct: 492 GHHGSHHSPAHHGHHGE-------HHHAPAHHGHHG-EHGTHHGHHGEHHHAPAHHGHHG 543
Query: 633 AHAVVLGTQEDADHSIDSFVGHDINRHLERMVIEAAHAGHKGHIGCLVLH 782
H G H + GH H AH GH GH G +H
Sbjct: 544 EHGTHHG--HHGSHHSPAHHGHHGEHHHA-----PAHHGHHGHHGSHGVH 586
Score = 29.9 bits (64), Expect = 2.3
Identities = 30/114 (26%), Positives = 34/114 (29%), Gaps = 2/114 (1%)
Frame = +3
Query: 60 TSMSEIQVGEIVLHHDHLRGVHGLAGVRHA--EVFSVDHYVSELHVVSEEARHVNRSVKW 233
T S GE HH H G H A H E H+ H E H
Sbjct: 412 THHSPAHHGEHGTHHGH-HGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGH 470
Query: 234 ISERHGGDT*APATSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQH 395
E H HHGH G H+ A H H H + G+H
Sbjct: 471 HGEHHHAPAHHGHHGEHGTHHGHH--GSHHSPAHHGHHGEHHHAPAHHGHHGEH 522
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/106 (26%), Positives = 35/106 (33%)
Frame = -2
Query: 402 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLHHASRISI*Q 223
E + AP + G+ H G H +A AH GH + G + HH S S
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG-------THHGHHGSHHSPAH 560
Query: 222 TD*HGELLH*QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSH 85
HGE H H H + GH GH H
Sbjct: 561 HGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGH---GHHAPAHH 603
>AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical
protein Y48A6B.8 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 675 CGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEH 550
C HL QVR + H+R +P V + TGQR EH
Sbjct: 500 CEHHLKWGQVRKFREQHQRMETSPEEV----IRFATGQRNEH 537
>U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical
protein T27F7.1 protein.
Length = 208
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 557 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMPSGDGQTMVKD 435
K+T V SM +PE + T R M +EMM G + M+++
Sbjct: 104 KSTEVMKSMQQLVKVPEIMKTMREMSAEMMKLGIIEEMIEE 144
>AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical
protein Y32H12A.7 protein.
Length = 600
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 248 WWRYMSSSDKHNGPSSWSCPMWARAYR 328
WWRY+ S +H+GP+ WA R
Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRR 146
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 675 CGPHLPGSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEH 550
C HL QVR + H+R +P + + TGQR EH
Sbjct: 500 CEHHLKWGQVRKFREQHQRMETSPEEM----IRFATGQRNEH 537
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -2
Query: 657 GSQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRKEHHRP*LHGYARIYPRVPFDSSCNGK 478
G R G R +P G+ Y +G R+E +R LHG R P P G
Sbjct: 529 GDGERKEGFIQPAHRPSPSFRGRGRGYGDSGFRRESYRGGLHGSDRYGPYPPRGGGFRGG 588
Query: 477 R 475
R
Sbjct: 589 R 589
>U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform c protein.
Length = 284
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 557 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 465
+N + ++DM+ F P RR++E++ P
Sbjct: 104 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 134
>U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform b protein.
Length = 290
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 557 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 465
+N + ++DM+ F P RR++E++ P
Sbjct: 110 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 140
>U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g
protein signalingprotein 3, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 557 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 465
+N + ++DM+ F P RR++E++ P
Sbjct: 183 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 213
>Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical
protein F43C1.2a protein.
Length = 376
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 530 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 429
D GF+ EY++TR E+M + G T D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical
protein F43C1.2b protein.
Length = 444
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 530 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 429
D GF+ EY++TR E+M + G T D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
>U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein.
Length = 376
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 530 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 429
D GF+ EY++TR E+M + G T D W
Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 215
>U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase
protein.
Length = 444
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 530 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW 429
D GF+ EY++TR E+M + G T D W
Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVW 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,631,168
Number of Sequences: 27780
Number of extensions: 443943
Number of successful extensions: 1437
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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