Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b08
(820 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069057-1|AAL39202.2| 345|Drosophila melanogaster GH06781p pro... 206 4e-53
AE013599-2766|AAM68444.1| 324|Drosophila melanogaster CG15093-P... 206 4e-53
AE013599-2765|AAF57639.2| 324|Drosophila melanogaster CG15093-P... 206 4e-53
AY069497-1|AAL39642.1| 602|Drosophila melanogaster LD22344p pro... 59 8e-09
AE014134-1751|AAF52846.3| 602|Drosophila melanogaster CG4747-PA... 59 8e-09
AF220178-1|AAG28589.1| 173|Drosophila melanogaster fruitless ty... 33 0.62
U72492-1|AAB92662.1| 675|Drosophila melanogaster fruitless clas... 32 0.82
AF039231-1|AAB96677.1| 776|Drosophila melanogaster fruitless cl... 32 0.82
AE014297-2529|AAN13774.1| 688|Drosophila melanogaster CG14307-P... 32 0.82
AE014297-2528|AAF55562.2| 789|Drosophila melanogaster CG14307-P... 32 0.82
AE014297-3749|AAF56430.2| 2695|Drosophila melanogaster CG11856-P... 29 7.6
>AY069057-1|AAL39202.2| 345|Drosophila melanogaster GH06781p
protein.
Length = 345
Score = 206 bits (502), Expect = 4e-53
Identities = 101/229 (44%), Positives = 150/229 (65%), Gaps = 2/229 (0%)
Frame = -3
Query: 764 SILTSNKVVLDVY--LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 591
++L +N +V Y + DGV K ++ IDSSTI P++ K + KG F DAP
Sbjct: 111 TMLPNNAIVDASYDEMTADGV----NKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAP 166
Query: 590 VSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGI 411
VSGGV GA+ ATL FM GG + ++ +L+ MG K HCG G GQ AKL NNM++ I
Sbjct: 167 VSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAI 226
Query: 410 TGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFK 231
+ + +E MN+ ++ GL+ V +++N+S+ R W++E+Y PVPG+ P+AP++R+Y GGF
Sbjct: 227 SMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFS 286
Query: 230 NELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVF 84
+ L+ KDL LASG+A SPIPLG++A ++Y+ + +G G KDFS V+
Sbjct: 287 SALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 335
>AE013599-2766|AAM68444.1| 324|Drosophila melanogaster CG15093-PB,
isoform B protein.
Length = 324
Score = 206 bits (502), Expect = 4e-53
Identities = 101/229 (44%), Positives = 150/229 (65%), Gaps = 2/229 (0%)
Frame = -3
Query: 764 SILTSNKVVLDVY--LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 591
++L +N +V Y + DGV K ++ IDSSTI P++ K + KG F DAP
Sbjct: 90 TMLPNNAIVDASYDEMTADGV----NKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAP 145
Query: 590 VSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGI 411
VSGGV GA+ ATL FM GG + ++ +L+ MG K HCG G GQ AKL NNM++ I
Sbjct: 146 VSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAI 205
Query: 410 TGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFK 231
+ + +E MN+ ++ GL+ V +++N+S+ R W++E+Y PVPG+ P+AP++R+Y GGF
Sbjct: 206 SMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFS 265
Query: 230 NELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVF 84
+ L+ KDL LASG+A SPIPLG++A ++Y+ + +G G KDFS V+
Sbjct: 266 SALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 314
>AE013599-2765|AAF57639.2| 324|Drosophila melanogaster CG15093-PA,
isoform A protein.
Length = 324
Score = 206 bits (502), Expect = 4e-53
Identities = 101/229 (44%), Positives = 150/229 (65%), Gaps = 2/229 (0%)
Frame = -3
Query: 764 SILTSNKVVLDVY--LGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAP 591
++L +N +V Y + DGV K ++ IDSSTI P++ K + KG F DAP
Sbjct: 90 TMLPNNAIVDASYDEMTADGV----NKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAP 145
Query: 590 VSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGI 411
VSGGV GA+ ATL FM GG + ++ +L+ MG K HCG G GQ AKL NNM++ I
Sbjct: 146 VSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAI 205
Query: 410 TGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFK 231
+ + +E MN+ ++ GL+ V +++N+S+ R W++E+Y PVPG+ P+AP++R+Y GGF
Sbjct: 206 SMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFS 265
Query: 230 NELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVF 84
+ L+ KDL LASG+A SPIPLG++A ++Y+ + +G G KDFS V+
Sbjct: 266 SALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 314
>AY069497-1|AAL39642.1| 602|Drosophila melanogaster LD22344p protein.
Length = 602
Score = 58.8 bits (136), Expect = 8e-09
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 3/220 (1%)
Frame = -3
Query: 734 DVYLGKDGVVAHAK-KGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 558
D+ G GV+ ++ STIDP+ I + + +A + G A
Sbjct: 387 DLVFGNCGVLQLKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEG 446
Query: 557 TLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNM 378
L +AGG + FE K + F G IG+ L ++G++ + AE + +
Sbjct: 447 MLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVGLAEALAL 506
Query: 377 GIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNEL--MVKDLE 204
+ + ++D+ + +S +S P L+ D + L M +DL
Sbjct: 507 ADRFSISLNDIIDIFDLTSMKS---------PMLLAKGKEMAKGDFNPQQPLSHMQRDLR 557
Query: 203 LASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVF 84
L MA + +P+ ++ ++++ + GY + D S VF
Sbjct: 558 LVLNMAENLDQSMPVTSITNEVFKHTKRLGYSEHDSSAVF 597
>AE014134-1751|AAF52846.3| 602|Drosophila melanogaster CG4747-PA
protein.
Length = 602
Score = 58.8 bits (136), Expect = 8e-09
Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 3/220 (1%)
Frame = -3
Query: 734 DVYLGKDGVVAHAK-KGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 558
D+ G GV+ ++ STIDP+ I + + +A + G A
Sbjct: 387 DLVFGNCGVLQLKDLNNKAYVEMSTIDPDTSLDIGEGIKQCNGRYLEAQIHGSRQEAAEG 446
Query: 557 TLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNM 378
L +AGG + FE K + F G IG+ L ++G++ + AE + +
Sbjct: 447 MLIILAGGDRSVFEECHSCFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVGLAEALAL 506
Query: 377 GIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNEL--MVKDLE 204
+ + ++D+ + +S +S P L+ D + L M +DL
Sbjct: 507 ADRFSISLNDIIDIFDLTSMKS---------PMLLAKGKEMAKGDFNPQQPLSHMQRDLR 557
Query: 203 LASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSFVF 84
L MA + +P+ ++ ++++ + GY + D S VF
Sbjct: 558 LVLNMAENLDQSMPVTSITNEVFKHTKRLGYSEHDSSAVF 597
>AF220178-1|AAG28589.1| 173|Drosophila melanogaster fruitless
type-B protein.
Length = 173
Score = 32.7 bits (71), Expect = 0.62
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 732 RVPGQRWRCGSCEKRIASDRFEYNRSECSQTDL-PYSP 622
R PG WRC SC K + ++R+ + S +Q + PY P
Sbjct: 109 RDPGTMWRCRSCGKEV-TNRWHHFHSHAAQRSMCPYCP 145
>U72492-1|AAB92662.1| 675|Drosophila melanogaster fruitless class I
female isoform protein.
Length = 675
Score = 32.3 bits (70), Expect = 0.82
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 732 RVPGQRWRCGSCEKRIASDRFEYNRSECSQTDL-PYSP 622
R PG WRC SC K + ++R+ + S +Q + PY P
Sbjct: 611 RDPGTMWRCRSCGKEV-TNRWHHFHSHTAQRSMCPYCP 647
>AF039231-1|AAB96677.1| 776|Drosophila melanogaster fruitless class
I male isoform protein.
Length = 776
Score = 32.3 bits (70), Expect = 0.82
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 732 RVPGQRWRCGSCEKRIASDRFEYNRSECSQTDL-PYSP 622
R PG WRC SC K + ++R+ + S +Q + PY P
Sbjct: 712 RDPGTMWRCRSCGKEV-TNRWHHFHSHTAQRSMCPYCP 748
>AE014297-2529|AAN13774.1| 688|Drosophila melanogaster CG14307-PF,
isoform F protein.
Length = 688
Score = 32.3 bits (70), Expect = 0.82
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 732 RVPGQRWRCGSCEKRIASDRFEYNRSECSQTDL-PYSP 622
R PG WRC SC K + ++R+ + S +Q + PY P
Sbjct: 624 RDPGTMWRCRSCGKEV-TNRWHHFHSHTAQRSMCPYCP 660
>AE014297-2528|AAF55562.2| 789|Drosophila melanogaster CG14307-PB,
isoform B protein.
Length = 789
Score = 32.3 bits (70), Expect = 0.82
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 732 RVPGQRWRCGSCEKRIASDRFEYNRSECSQTDL-PYSP 622
R PG WRC SC K + ++R+ + S +Q + PY P
Sbjct: 725 RDPGTMWRCRSCGKEV-TNRWHHFHSHTAQRSMCPYCP 761
>AE014297-3749|AAF56430.2| 2695|Drosophila melanogaster CG11856-PA
protein.
Length = 2695
Score = 29.1 bits (62), Expect = 7.6
Identities = 31/100 (31%), Positives = 44/100 (44%)
Frame = +1
Query: 331 FSTSNRTFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRRGR 510
F+T+ FG+SPI +P + +P +PI S A P PI N P T
Sbjct: 1097 FNTTTPVFGASPIQVP--QSKPLTVPTVPI----PSTAPAP-PIAGTVN--PPAT----- 1142
Query: 511 DLSKSSLRPPAMKARVAF*APMTPPDTGASVNPSPFSRAI 630
+++ PP +VA P PP PS F+RA+
Sbjct: 1143 ----TAVPPPVHIPQVAPSVPAQPPAPAPVSVPSMFNRAL 1178
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,286,894
Number of Sequences: 53049
Number of extensions: 973186
Number of successful extensions: 4421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4379
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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