Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b06
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...   174   2e-44
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   2.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   3.4  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   4.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   4.5  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    26   6.0  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score =  174 bits (423), Expect = 2e-44
 Identities = 95/252 (37%), Positives = 151/252 (59%), Gaps = 13/252 (5%)
 Frame = -2

Query: 779 KYEDIPDQT--KWNLDPNASYVHICTNETIHGVEFDFIPDT--KGVPLIADMSSNIMSKK 612
           KY  +P+    K+  D   S V+ C NET+HGVEF+  P    KG   + D+SSN +S+K
Sbjct: 141 KYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKGAIRVCDVSSNFISRK 200

Query: 611 VDVSKFGVIYAGAQKNIGTSGVALVIVREDLLNQA---------LPTCPSLLDWTANYKQ 459
           +D +K  +I+AGAQKN G +G+ +V VR+ +L +          +P  P++ D+      
Sbjct: 201 IDFTKHDIIFAGAQKNAGPAGITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMADN 260

Query: 458 NSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKN 279
           +S+ NT P+  ++ +   L+++  +GGL  +   + +K+ L+Y+T+++ +  Y + V   
Sbjct: 261 HSLYNTLPVATLHAINLGLEYMLEHGGLVALEASSIEKSKLLYDTLDKHD-LYISVVEPA 319

Query: 278 VRSKMNVPFRIGCPGDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQAL 99
            RS+MNV FRI       LE EFL  AE   L+QLKG+R VGGIRAS+YNA+++E+ + L
Sbjct: 320 ARSRMNVTFRIE---PQELESEFLAEAEKHHLVQLKGYRSVGGIRASLYNAISVEQTRRL 376

Query: 98  VQYMEEFYKKHS 63
           +  +E F K HS
Sbjct: 377 IDLLESFAKAHS 388


>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 191 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 277
           K ++P+RI  LR +H+  Q    + FY E
Sbjct: 117 KLRYPNRITILRGNHESRQITQVYGFYDE 145


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 22/90 (24%), Positives = 34/90 (37%)
 Frame = +1

Query: 565 FF*APAYITPNFETSTFFDIMFEDISAIKGTPFVSGMKSNSTPCIVSLVQICTYEALGSR 744
           FF   A   PN   S F  IM +++  +KG   +  M ++S       +     E    R
Sbjct: 287 FFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKALLMNMPTSSISFAALTLFGLIPEFTNRR 346

Query: 745 FHFV*SGMSSYLSVGGSTKFTFPYFFRLLG 834
                 G++  L+ G    F  P   +L G
Sbjct: 347 MDIALVGLAINLTSGSLIAFAKPTHAQLAG 376


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 191 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 277
           K ++P RI  LR +H+  Q    + FY E
Sbjct: 104 KIRYPQRITILRGNHESRQITQVYGFYDE 132


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 610 TFFDIMFEDISAIKGTPFVS 669
           TF+DI+FED+  +  +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 155 GGIRASIYNAVTLEEVQALVQYMEEFYKKHSK*ILLN 45
           G I A++ N+VTL    +     E++YK H    LLN
Sbjct: 443 GSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLN 479


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 586  ITPNFETSTFFDIMFEDISAIKGT 657
            ITPN  TS FFD++ +D     G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 523 SSLTMTSATPDVPIFF*APAYITPNFETSTF 615
           + L++ S+TP  P+    P Y TP+   S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,827,806
Number of Sequences: 5004
Number of extensions: 87754
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)