Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b06
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0398 + 3092577-3093857 239 2e-63
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 33 0.29
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 32 0.68
05_01_0493 + 4113869-4116728,4116859-4117370 31 0.90
10_01_0316 + 3479574-3482679,3482766-3483127 30 2.1
12_01_0197 + 1456296-1456668,1456930-1458746 30 2.7
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151... 30 2.7
06_03_0675 - 23428948-23431389 30 2.7
01_01_0490 + 3620523-3623403,3623524-3623996 30 2.7
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996... 29 3.6
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724 29 3.6
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373... 29 3.6
06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328... 29 4.8
04_04_1420 + 33441260-33443704 29 6.3
04_04_1419 - 33433463-33436009 29 6.3
01_06_0199 - 27467548-27469992 29 6.3
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624... 28 8.4
06_01_0465 - 3304417-3306834 28 8.4
>03_01_0398 + 3092577-3093857
Length = 426
Score = 239 bits (585), Expect = 2e-63
Identities = 121/258 (46%), Positives = 165/258 (63%), Gaps = 3/258 (1%)
Frame = -2
Query: 830 RRRKKYGKVNLVLPPTD-KYEDIPDQTKWNLDPNASYVHICTNETIHGVEFDFIPDTKGV 654
+ KK+ ++ D KY +P +P A ++HIC+NETIHGVEF P+ K
Sbjct: 170 KEAKKFSAASVAWSGKDGKYTSLPPFDAIEQNPEARFLHICSNETIHGVEFKDYPEPKNK 229
Query: 653 P--LIADMSSNIMSKKVDVSKFGVIYAGAQKNIGTSGVALVIVREDLLNQALPTCPSLLD 480
L+ADMSSN SK VDVS+FG+IYAGAQKN+G SGV + IVR+DL+ A P P +LD
Sbjct: 230 SGILVADMSSNFCSKPVDVSRFGLIYAGAQKNVGPSGVTIAIVRKDLVGSAQPITPVMLD 289
Query: 479 WTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFY 300
+ + S+ NTPP FAIYI G V + + GGL + + KA ++Y+ I+ S G+Y
Sbjct: 290 YKTHADNASLYNTPPCFAIYICGLVFEDLLAQGGLAEVEKKNAHKAGILYDAIDASGGYY 349
Query: 299 YAPVAKNVRSKMNVPFRIGCPGDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVT 120
PV K+VRS MNVPF + GD EK+F+ A G++QLKGHR VGG+RASIYNA+
Sbjct: 350 ICPVEKSVRSLMNVPFTLAKGGD--FEKQFIAEAAKEGMVQLKGHRSVGGVRASIYNAMP 407
Query: 119 LEEVQALVQYMEEFYKKH 66
L V+ LV +M++F ++
Sbjct: 408 LAGVEKLVAFMKDFQARN 425
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -2
Query: 545 ALVIVREDLLNQA-LPTCPSLLDWTANYKQNSILNTPPMFAIYIM 414
A+++ R ++L++ L CP L++W ++N + +T PM AI ++
Sbjct: 245 AIIVSRPEMLSKMYLEACPKLIEWFREREEN-VKSTEPMLAILLL 288
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 387 EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
EWR R N+++G + L YL H ++W + C
Sbjct: 613 EWRQRFNIAVGVAKGLAYLHHE-CLEWVIHC 642
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 31.5 bits (68), Expect = 0.90
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 414 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN 322
G++ T EW +R +++G E LTYL H+
Sbjct: 869 GATTTAAVVEWEVRLAIAVGVAEGLTYLHHD 899
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 393 SKEWRIRRNVSIGNKESLTYLQHN 322
S +W +R +++G ESL+YL H+
Sbjct: 957 SLDWNVRHQIALGVAESLSYLHHD 980
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -1
Query: 426 HLYNGS--SITMDSK---EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
++ NGS ++ +SK +W+ R N+++G + L YL H ++W + C
Sbjct: 517 YVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHE-CLEWVIHC 564
>11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,
1510195-1510256,1510406-1510479,1510812-1510864,
1511072-1513550
Length = 1134
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = -1
Query: 426 HLYNGS--SITMDSK---EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
++ NGS ++ +SK +W+ R N+++G + L YL H ++W + C
Sbjct: 922 YVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHE-CLEWVIHC 969
>06_03_0675 - 23428948-23431389
Length = 813
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 414 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
GS + EW+ R +++G + L YL H ++W + C
Sbjct: 604 GSEASQTLLEWKQRFKIALGVAKGLAYLHHE-CLEWVIHC 642
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 414 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN 322
G++I EW +R ++++G E L YL H+
Sbjct: 876 GAAIGAAVVEWEVRLSIAVGVAEGLAYLHHD 906
>09_03_0003 +
11396076-11396386,11398803-11398869,11399194-11399698,
11400903-11401038,11401186-11401257,11401891-11401923,
11401924-11402047,11402387-11402437,11403437-11403563,
11404230-11404298,11404369-11404486,11404755-11405151
Length = 669
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 800 LVLPPTDKYEDIP-DQTKWNLDPNASYVHICTNETI 696
L+LPP +Y D P D+ W ++ ++I TN+TI
Sbjct: 120 LLLPPFQRYPDDPYDRLWWPWQGSSRLLNISTNQTI 155
>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
Length = 302
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 590 VIYAGAQKNIGTSGVALVIVREDLLNQALPTCPSLLD 480
V++ +K GT+G+ I LL+Q P CP+ D
Sbjct: 56 VVHFTRKKEAGTAGLDSAIAISSLLSQGSPECPTFPD 92
>07_03_0902 -
22435692-22436156,22436684-22436923,22437228-22437349,
22437441-22437587,22437753-22437882,22437981-22438116,
22438223-22438428,22438644-22438844,22438999-22439157,
22439781-22439858,22440453-22440542,22440625-22440777,
22440873-22440991,22441190-22441328,22441422-22441525,
22441944-22441989,22442087-22442252,22442356-22442383,
22442460-22442610,22442686-22442829,22442912-22443013,
22443566-22444093
Length = 1217
Score = 29.5 bits (63), Expect = 3.6
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Frame = -2
Query: 737 PNASYVHICTNETIHGVEFDFI-PDTK--GVPLIADMSSNIMSKKVDV---SKFGVIYAG 576
P A +H E + E + P TK G P+ D ++ KK+ V S G
Sbjct: 133 PYADNIHKERKEMMVSKELPSVSPRTKTNGKPVFTDTMDYVLQKKLRVWCSSPDATWKLG 192
Query: 575 AQKNIGTSGVALVIVREDLL----NQALPTCPSLLDWTANYKQNSILNTP 438
+++ V +++V ++L ++ LP P +LD N S LN P
Sbjct: 193 QIQSVSGDDVEILLVNGEVLTLSPDRLLPANPDILDGVDNLIHLSYLNEP 242
>06_01_0461 -
3280874-3281757,3281777-3282343,3282398-3283249,
3284503-3284644
Length = 814
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 387 EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
+W R N++IG + L YL H ++W + C
Sbjct: 630 KWNQRYNIAIGVAKGLAYLHHE-CLEWIVHC 659
>04_04_1420 + 33441260-33443704
Length = 814
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 384 WRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
WR R +++G ++L YL H ++W + C
Sbjct: 618 WRSRYKIAVGVAKALAYLHHE-CLEWIVHC 646
>04_04_1419 - 33433463-33436009
Length = 848
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 384 WRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
WR R +++G ++L YL H ++W + C
Sbjct: 612 WRSRYKIAVGVAKALAYLHHE-CLEWIVHC 640
>01_06_0199 - 27467548-27469992
Length = 814
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -1
Query: 414 GSSITMDSKEWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
G ++ + W+ R +++G L YL H ++W + C
Sbjct: 611 GGGMSTTTLAWKDRYKIALGTARGLAYLHHE-CLEWVIHC 649
>12_02_0629 -
21360831-21361310,21361391-21361663,21362212-21362488,
21362590-21362735,21363207-21363416
Length = 461
Score = 28.3 bits (60), Expect = 8.4
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = -2
Query: 290 VAKNVRSKMNVPFRIGCPGDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEE 111
+AK + + ++ P R+ PG+D + G + G + +K D G +A + LE
Sbjct: 264 IAKALSAPLDTPPRVFVPGEDEYKSGKENGYD-FGFLHIKAIDDAGHDKAVKLKVLGLEA 322
Query: 110 V-QALVQ 93
V +A+VQ
Sbjct: 323 VDRAIVQ 329
>06_01_0465 - 3304417-3306834
Length = 805
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 387 EWRIRRNVSIGNKESLTYLQHN*AIKWFLLC 295
+W R N+++G + L YL H ++W + C
Sbjct: 615 QWSQRYNIALGVAKGLAYLHHE-CLEWIVHC 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,573,121
Number of Sequences: 37544
Number of extensions: 510610
Number of successful extensions: 1212
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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