Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b06
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81516-3|CAB04204.1| 370|Caenorhabditis elegans Hypothetical pr... 252 3e-67
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 35 0.065
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81078-5|CAB03078.2| 722|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75535-4|CAA99828.2| 722|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z66499-5|CAE17941.1| 143|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF098985-2|AAC67420.3| 166|Caenorhabditis elegans Hypothetical ... 28 7.5
>Z81516-3|CAB04204.1| 370|Caenorhabditis elegans Hypothetical
protein F26H9.5 protein.
Length = 370
Score = 252 bits (616), Expect = 3e-67
Identities = 119/254 (46%), Positives = 166/254 (65%), Gaps = 2/254 (0%)
Frame = -2
Query: 818 KYGKVNLVLPPTDKYEDIPDQTKWNLDPNASYVHICTNETIHGVEFD-FIPDTKGVPLIA 642
KY V V P+ Y +PDQ W D A+Y++ C NET+HG+EF P++ VPL+A
Sbjct: 115 KYINVKKVFQPSKPYVTVPDQENWVHDEKAAYLYYCANETVHGIEFTPTAPESHNVPLVA 174
Query: 641 DMSSNIMSKKVDVSKFGVIYAGAQKNIGTSGVALVIVREDLLNQALPTCPSLLDWTANYK 462
D+SSN M++ D GV++ GAQKN+G +G+ +VIVR+DL+ + PS+ +
Sbjct: 175 DVSSNFMARPFDFKDHGVVFGGAQKNLGAAGLTIVIVRKDLIGKQQAITPSVFSYKEMIA 234
Query: 461 QNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAK 282
NS+ NTPP IY VL+WI+ GGL+ + +L +K+ +IY+ I+ SNGFY+ V K
Sbjct: 235 NNSLYNTPPTGGIYTTNLVLKWIKSKGGLQAIYELNLQKSGMIYDIIDNSNGFYHCAVDK 294
Query: 281 NVRSKMNVPFRIGCP-GDDALEKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQ 105
RS MNV FRIG P G+D LE++FLKG+ +I LKGHR VGGIRAS+YNA+++EE Q
Sbjct: 295 RYRSIMNVCFRIGGPSGNDELEEKFLKGSIERNMISLKGHRSVGGIRASLYNAISVEETQ 354
Query: 104 ALVQYMEEFYKKHS 63
L +M EF K H+
Sbjct: 355 VLATWMNEFQKLHN 368
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 35.1 bits (77), Expect = 0.065
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = -2
Query: 821 KKYGKVNLVLPPTDKYEDIPDQTKWNLDPNASYVHICTNETIHGVEFDFIPDTKGVPLIA 642
K+ + ++ TD++ D+ +Q L + HICT+ +E D P TKG P +
Sbjct: 575 KENSRFRILSESTDEHSDVKNQ----LINGLNKFHICTSPV--WIEIDHGPQTKGFPFLH 628
Query: 641 DMSSNIMSKKVDVSKFGVIYAGAQ 570
D+S N + +D K V+ A+
Sbjct: 629 DVSFNGI-LAIDKDKVNVLVEPAE 651
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 668 DTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNI 561
D + + +A+ SN SKK ++G +YAG +N+
Sbjct: 566 DKREITFLAEGDSNPHSKKTQKDRYGQLYAGITENL 601
>Z81078-5|CAB03078.2| 722|Caenorhabditis elegans Hypothetical
protein F14B4.1 protein.
Length = 722
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 500 TC-PSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNT 324
TC P + K ++ PM+ + G+ + I +G + + +K ++I
Sbjct: 299 TCDPRTYKLATDNKTCERIDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDID 358
Query: 323 IEQSNGFYYAPVAKNVRSKMNV 258
+++ N YYA + NV +MN+
Sbjct: 359 VKE-NRLYYADIGANVIERMNI 379
>Z75535-4|CAA99828.2| 722|Caenorhabditis elegans Hypothetical
protein F14B4.1 protein.
Length = 722
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -2
Query: 500 TC-PSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNT 324
TC P + K ++ PM+ + G+ + I +G + + +K ++I
Sbjct: 299 TCDPRTYKLATDNKTCERIDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDID 358
Query: 323 IEQSNGFYYAPVAKNVRSKMNV 258
+++ N YYA + NV +MN+
Sbjct: 359 VKE-NRLYYADIGANVIERMNI 379
>Z66499-5|CAE17941.1| 143|Caenorhabditis elegans Hypothetical
protein T01B7.9 protein.
Length = 143
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 492 GTCR*SLIQKILSNNDKRYPRCTNILLSTSIYHPKL 599
G C + K L NN C N+ +S+S+Y P L
Sbjct: 59 GVCYGDICVKSLVNNHYVSKGCENLTISSSVYEPHL 94
>AF098985-2|AAC67420.3| 166|Caenorhabditis elegans Hypothetical
protein C08G5.2 protein.
Length = 166
Score = 28.3 bits (60), Expect = 7.5
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 650 LIADMSSNIMSKKVDVSKFGVIYA-GAQKNIGTSGVALVIVREDLLNQALPTCPSLLDWT 474
+I D+ N+ + VD GV Y GA+ N+ +G V+ L + P P +DW
Sbjct: 43 IIKDLDLNLNTITVD----GVEYQLGAENNL--NGTPKVLATRQLEGRR-P--PMNVDWL 93
Query: 473 ANYKQNSILNTPPMFAIYIMGRVLQWIQRN 384
N I++ PP F + + + W N
Sbjct: 94 TIPNDNRIIDLPPSFEQFKIRMLSDWSPNN 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,914,142
Number of Sequences: 27780
Number of extensions: 477198
Number of successful extensions: 1244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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