Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15b05
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 33 0.037
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.20
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 31 0.26
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 29 0.80
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 27 3.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.2
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.3
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 27 4.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.7
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 26 5.7
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 9.9
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 33.5 bits (73), Expect = 0.037
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -1
Query: 775 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 620
++ A+AG+ LS + N+D+ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 313 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADSTRE 206
+++ YN+ M T++C+C+S + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = -1
Query: 628 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRLIMAGNYVKIIYRNYNL 449
+II V+N I+D+ + ++C ++W G + +R ++ N ++ K IY +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305
Query: 448 A 446
A
Sbjct: 306 A 306
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 29.1 bits (62), Expect = 0.80
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 313 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 221
HN +N + + S T+ + SR+ V+ GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 650 FQALTDSTVVVAGEDAVVQFLLEVLV 727
F +T V+V EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +2
Query: 512 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 622
W+VL +++L+ ++ P V LHGV + VN V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 727 NQDLEEKLYNSILTGDYDSAVRQSLE 650
+ DLE+ + ++LTGD SAV+ LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 253 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 149
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 108 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 19
TPRETA+ L ++ +P R SL K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 762 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 652
AR SLNY ++ + SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 625 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 524
+++++ NL I N +EY LW NG I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 9.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 804 ETSRXYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSP-ATTTVLS 664
E R ++R PP R S PR L S N T ++P ATTT S
Sbjct: 222 EEPREWVRRGPLPP-RESSERPRLNLKPRSSSNVNTEATPSATTTTSS 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,457
Number of Sequences: 5004
Number of extensions: 64113
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -