Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b03
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   2.4  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   3.1  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    23   4.1  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 2  FLVFSVCEGSLGLSILVSII 61
          FLVFS CE  +G S+   +I
Sbjct: 4  FLVFSACEVFVGFSLCTLVI 23


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   FLVFSVCEGSLGLSILVSIIRSHGND 79
           F++F+ C   + LSI    IR+ GND
Sbjct: 262 FMLFAWCIYGILLSIFFKEIRADGND 287


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +2

Query: 26  GSLGLSILVSIIRSHGN---DYFQRFRIL 103
           G +G+SI+  +I  +GN   DYF   R+L
Sbjct: 141 GLIGISIMKRLIGDNGNDERDYFVENRLL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,872
Number of Sequences: 5004
Number of extensions: 2584
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)