Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15b03
         (154 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   3.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   3.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   3.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   4.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    19   5.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   5.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   7.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    18   9.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    18   9.9  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 90  DLEYYNDKIFIYNNFYN 140
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 90  DLEYYNDKIFIYNNFYN 140
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 90  DLEYYNDKIFIYNNFYN 140
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 114 IFIYNNFYNSF 146
           IFIYN+F   F
Sbjct: 103 IFIYNSFNTGF 113


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 102 YNDKIFIYNNFYNS 143
           YN+    YNN YN+
Sbjct: 94  YNNNYNNYNNNYNT 107


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 102 YNDKIFIYNNFYNSF 146
           YN+    YNN+ N++
Sbjct: 330 YNNNYNNYNNYNNNY 344


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 YNDKIFIYNNFYNSFMF 152
           YN+K    NN YN  ++
Sbjct: 100 YNNKYNYNNNNYNKKLY 116


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 114 IFIYNNFYNSF 146
           + IYNN  NSF
Sbjct: 211 LIIYNNSDNSF 221


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +2

Query: 29  SLGLSILVSII 61
           +LG+SIL+S++
Sbjct: 266 TLGISILLSLV 276


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 93  LEYYNDKIFI 122
           ++ +NDK+FI
Sbjct: 56  MQIWNDKVFI 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,211
Number of Sequences: 438
Number of extensions: 274
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)