Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15a22
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 300 6e-82
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.51
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.51
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.51
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.51
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.51
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.51
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 31 0.90
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 31 0.90
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 29 2.7
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 6.3
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 6.3
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 6.3
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 300 bits (736), Expect = 6e-82
Identities = 139/203 (68%), Positives = 165/203 (81%)
Frame = -3
Query: 611 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 432
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRL
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60
Query: 431 DTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 252
D+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 61 DSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120
Query: 251 LGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 72
L RKK AKL+E + AI+NKKRS T +KY RQ+ A V+ L EQF+TGRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180
Query: 71 QCGRADGYILEGKELEFYLRKIK 3
Q G+A+GYILEGKEL+FYLRKI+
Sbjct: 181 QVGQANGYILEGKELDFYLRKIR 203
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 443 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 339
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 443 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 339
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 443 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 339
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 443 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 339
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 443 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 339
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 443 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 339
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 30.7 bits (66), Expect = 0.90
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = -3
Query: 386 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 216
T+I+ + Y A E + K L+ K +I+ + + +S+ RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 215 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 99
++AI ++ + +K L + + +K E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 30.7 bits (66), Expect = 0.90
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = -3
Query: 386 TRIIDVVYNASNNELVRTKTLV---KNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEA 216
T+I+ + Y A E + K L+ K +I+ + + +S+ RKK +T
Sbjct: 279 TKILKLKYEARQQEDIENKKLIEERKRSIIELLRRKIAEKKKSNTVKGSDRKK---ITSL 335
Query: 215 EEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRL 99
++AI ++ + +K L + + +K E LEE+ +L
Sbjct: 336 KKAIAKEQEKLEKGKKELEQLQSSKTESDLEEEISAMQL 374
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 496 ALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 356
++ E+TP + EI+ST VW V ++ K +S C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -3
Query: 245 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 120
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 340 TNSLLDALYTTSMIRVLRV 396
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 401 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 279
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,709
Number of Sequences: 27780
Number of extensions: 298732
Number of successful extensions: 931
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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