Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15a20
(843 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 125 2e-28
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 125 2e-28
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 123 7e-28
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 45 3e-04
AL050216-1|CAB43319.1| 316|Homo sapiens hypothetical protein pr... 45 3e-04
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 45 4e-04
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 38 0.046
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 38 0.046
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 38 0.046
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 125 bits (301), Expect = 2e-28
Identities = 82/274 (29%), Positives = 123/274 (44%), Gaps = 8/274 (2%)
Frame = -3
Query: 817 AAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQN-LK 641
AAYR L N L+ RI ++SE L F + T +R A+ +G S + + L
Sbjct: 180 AAYRNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 239
Query: 640 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 461
+ + Y GGE+R++ G L H A + A AGS + LG GP
Sbjct: 240 MRGGLGLSGAKANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHV 299
Query: 460 KWGADN-SPLAKAIGNIG--PFAAAGFNVSYSDNGLFGVVL----SVPKDEXXXXXXXXX 302
K G++ S L +A+ PF + FN SYSD+GLFG+ + D
Sbjct: 300 KRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVK 359
Query: 301 XXXKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQI 122
+ +LS ++A KN+LK L ++ E + +Q L GS + + ID +
Sbjct: 360 TIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSV 419
Query: 121 SNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 20
+N DI A + S+ A GNL P++DEL
Sbjct: 420 ANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 125 bits (301), Expect = 2e-28
Identities = 82/274 (29%), Positives = 123/274 (44%), Gaps = 8/274 (2%)
Frame = -3
Query: 817 AAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQN-LK 641
AAYR L N L+ RI ++SE L F + T +R A+ +G S + + L
Sbjct: 180 AAYRNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 239
Query: 640 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 461
+ + Y GGE+R++ G L H A + A AGS + LG GP
Sbjct: 240 MRGGLGLSGAKANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHV 299
Query: 460 KWGADN-SPLAKAIGNIG--PFAAAGFNVSYSDNGLFGVVL----SVPKDEXXXXXXXXX 302
K G++ S L +A+ PF + FN SYSD+GLFG+ + D
Sbjct: 300 KRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVK 359
Query: 301 XXXKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQI 122
+ +LS ++A KN+LK L ++ E + +Q L GS + + ID +
Sbjct: 360 TIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSV 419
Query: 121 SNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 20
+N DI A + S+ A GNL P++DEL
Sbjct: 420 ANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 123 bits (297), Expect = 7e-28
Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 8/274 (2%)
Frame = -3
Query: 817 AAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQN-LK 641
AAY+ L N L+ RI ++SE L F + T +R A+ +G S + + L
Sbjct: 180 AAYQNALANPLYCPDYRIGKVTSEELHYFVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 239
Query: 640 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 461
+ + Y GGE+R++ G L H A + A AGS + LG GP
Sbjct: 240 MRGGLGLSGAKANYRGGEIREQNGDSLVHAAFVAESAVAGSAEANAFSVLQHVLGAGPHV 299
Query: 460 KWGADN-SPLAKAIGNIG--PFAAAGFNVSYSDNGLFGVVL----SVPKDEXXXXXXXXX 302
K G++ S L +A+ PF + FN SYSD+GLFG+ + D
Sbjct: 300 KRGSNTTSHLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVK 359
Query: 301 XXXKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQI 122
+ +LS ++A KN+LK L ++ E + +Q L GS + + ID +
Sbjct: 360 RIAQGNLSNTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSV 419
Query: 121 SNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 20
+N DI A + S+ A GNL P++DEL
Sbjct: 420 ANADIINAAKKFVSGQKSMAASGNLGHTPFVDEL 453
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 45.2 bits (102), Expect = 3e-04
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 9/198 (4%)
Frame = -3
Query: 601 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 431
+ G E+R ++ LAH+A+AV+ P +GN + G N S LA
Sbjct: 270 FTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLA 329
Query: 430 KAI--GNIGPFAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAI 266
+ GN+ + FN SY+D GL+G+ + S + TS++ +
Sbjct: 330 QLTCHGNLC-HSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 388
Query: 265 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 86
+N LKT +L + D + + E + Q L ++ ID ++ I + +
Sbjct: 389 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 448
Query: 85 AKNKI-SIGAVGNLAFVP 35
N+ +I AVG + +P
Sbjct: 449 IYNRSPAIAAVGPIKQLP 466
>AL050216-1|CAB43319.1| 316|Homo sapiens hypothetical protein
protein.
Length = 316
Score = 45.2 bits (102), Expect = 3e-04
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 9/198 (4%)
Frame = -3
Query: 601 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 431
+ G E+R ++ LAH+A+AV+ P +GN + G N S LA
Sbjct: 106 FTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLA 165
Query: 430 KAI--GNIGPFAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAI 266
+ GN+ + FN SY+D GL+G+ + S + TS++ +
Sbjct: 166 QLTCHGNLC-HSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 224
Query: 265 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 86
+N LKT +L + D + + E + Q L ++ ID ++ I + +
Sbjct: 225 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 284
Query: 85 AKNKI-SIGAVGNLAFVP 35
N+ +I AVG + +P
Sbjct: 285 IYNRSPAIAAVGPIKQLP 302
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 44.8 bits (101), Expect = 4e-04
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 9/196 (4%)
Frame = -3
Query: 601 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 431
+ G E+R ++ LAH+A+AV+ P +GN + G N S LA
Sbjct: 279 FTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLA 338
Query: 430 KAI--GNIGPFAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAI 266
+ GN+ + FN SY+D GL+G+ + S + TS++ +
Sbjct: 339 QLTCHGNLC-HSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 397
Query: 265 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 86
+N LKT +L + D + + E + Q L ++ ID ++ I + +
Sbjct: 398 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 457
Query: 85 AKNKI-SIGAVGNLAF 41
N+ +I AVG F
Sbjct: 458 IYNRSPAIAAVGKPGF 473
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.046
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Frame = -3
Query: 601 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD--NSPLA 431
+ G E+R ++ AHVA+AV+G SP +G+ T G +SPLA
Sbjct: 270 FTGSEIRHRDDALPFAHVAIAVEGPGWASPDSVALQVANAIIGHYDCTYGGGVHLSSPLA 329
Query: 430 K-AIGNIGPFAAAGFNVSYSDNGLFG---VVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 263
A+ N + F++ Y++ GL G V + D+ TS + +
Sbjct: 330 SGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVA 389
Query: 262 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTG 167
GKN L+ +++ D + + E + L G
Sbjct: 390 RGKNILRNALVSHLDGTTPVCEDIGRSLLTYG 421
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.046
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Frame = -3
Query: 601 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD--NSPLA 431
+ G E+R ++ AHVA+AV+G SP +G+ T G +SPLA
Sbjct: 270 FTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLA 329
Query: 430 K-AIGNIGPFAAAGFNVSYSDNGLFG---VVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 263
A+ N + F++ Y++ GL G V + D+ TS + +
Sbjct: 330 SGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVA 389
Query: 262 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTG 167
GKN L+ +++ D + + E + L G
Sbjct: 390 RGKNILRNALVSHLDGTTPVCEDIGRSLLTYG 421
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.046
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Frame = -3
Query: 601 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD--NSPLA 431
+ G E+R ++ AHVA+AV+G SP +G+ T G +SPLA
Sbjct: 270 FTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLA 329
Query: 430 K-AIGNIGPFAAAGFNVSYSDNGLFG---VVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 263
A+ N + F++ Y++ GL G V + D+ TS + +
Sbjct: 330 SGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVA 389
Query: 262 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTG 167
GKN L+ +++ D + + E + L G
Sbjct: 390 RGKNILRNALVSHLDGTTPVCEDIGRSLLTYG 421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,386,965
Number of Sequences: 237096
Number of extensions: 2043817
Number of successful extensions: 4253
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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