Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15a06
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    34   0.15 
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990...    31   1.1  
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    31   1.1  
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491...    29   4.4  
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819...    29   4.4  
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    29   5.8  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   7.6  

>06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629,
            12950167-12950369,12950922-12951620,12951723-12951784,
            12952395-12952404,12954905-12957631
          Length = 1391

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/92 (27%), Positives = 39/92 (42%)
 Frame = +2

Query: 185  VTPGVGWPREHQRLVVFAIVHEEQNVVVVLSGLQGPLGLKSFDAVGPVGHVVMVRGCLNC 364
            V P V       RL V   + E  N  + +  ++    ++  DA GP G   ++ G  N 
Sbjct: 1200 VFPMVALNESMTRLAVGDAIGEIHNATIRVYDIESVTKIRILDASGPPGLPSLLDGSSNT 1259

Query: 365  QRQILITLSVHNLEVDLVVLPQRNELPADFWT 460
               ILIT    +LE + +V    N L   +W+
Sbjct: 1260 TATILITALSFSLEGEGLVAFSENGLMIRWWS 1291


>09_06_0106 -
           20898480-20898680,20898762-20898864,20898953-20899047,
           20899113-20899135,20899725-20899799,20900219-20900267,
           20900349-20900414,20901257-20901306,20901688-20901812,
           20903488-20903600
          Length = 299

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 307 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 197
           GF   WT +P K+DN   F    RE +E L L  PTD
Sbjct: 181 GFDGAWTKEPLKFDNS-YFLELLREESEGL-LKLPTD 215


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -3

Query: 529 ALTLDDENSNDG-RLAYGDGKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQYLTLAVQT 353
           A  + DE+  DG R            K+  + +P+W  + VYF I NTQ     T   Q 
Sbjct: 357 AAIVSDEDLEDGDRWRLCTVSQVEEVKILLRLIPIWLTSAVYF-IANTQAQ--TTFVQQG 413

Query: 352 TPNHNHMAYGANSV 311
           T     +A GA SV
Sbjct: 414 TKTDGRIARGAFSV 427


>08_02_1497 -
           27548328-27548534,27548876-27548978,27549074-27549153,
           27549245-27549327,27549899-27549947,27550028-27550093,
           27550254-27550303,27550762-27550886,27551842-27551954
          Length = 291

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 307 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 197
           GF+  WT +P K+DN     +   E +E L L  PTD
Sbjct: 171 GFEGAWTQEPLKFDNSYFLELLKGE-SEGL-LKLPTD 205


>04_01_0623 -
           8198301-8198504,8198805-8198907,8199065-8199144,
           8199239-8199321,8199593-8199641,8199736-8199801,
           8200118-8200167,8200299-8200423,8200568-8200683
          Length = 291

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 307 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLSRPTD 197
           GF   WT  P K+DN   F    +E +E L L  PTD
Sbjct: 172 GFDGAWTKDPLKFDNS-YFIELLKENSEGL-LKLPTD 206


>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 757 DHSVEKSKQXYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLW--LQGSKDIVREC 599
           D  +++ K+ Y +   + + N + ++   N +     AY+LW    G K  +REC
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 292 WTLQPAKYDNDVLFFMYNREYNEALVL 212
           W      Y  DVL F YN+EY++  V+
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVV 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,368,491
Number of Sequences: 37544
Number of extensions: 415971
Number of successful extensions: 1309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)