Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15a06
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          29   0.038
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.7  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 0.038
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 806 LQTRRRSLQQHPRC--RLRPFR*KEQTDXRGQEERSHHKCRKQTHTKQQ--DELHGVRLP 639
           L++R RS Q+   C  R    R +++   R   ERS  + R + + K +  D+LH V   
Sbjct: 217 LRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEK 276

Query: 638 AMAPRLQRYR 609
            +  R  R R
Sbjct: 277 HLRERTSRRR 286


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 607 RECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVS 446
           R    +   L   E  IK+ ++     +    EN + G    GDG  + SP+ S
Sbjct: 298 RRRIEIAHALCLTERQIKIWFQNR--RMKWKKENKSKGTPGSGDGDTEISPQTS 349


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 115 KPLYPKRTARDFRPRGHCIRTPCGYPR 195
           +P+ P  + ++  PR  CI  P  +PR
Sbjct: 133 RPMGPWISVQEQVPRFRCIGPPTPFPR 159


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 807 TPNSKTIFTTASSLPITTIP 748
           TP +  I  + +++PIT++P
Sbjct: 841 TPTTSVISMSGTTVPITSLP 860


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 601 TPGRYLWSLGAIAGRRTP 654
           TPG + +S+ A+A   TP
Sbjct: 304 TPGSFNFSMAALATEHTP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,969
Number of Sequences: 438
Number of extensions: 4501
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)