Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15a05
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 26 0.72
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 0.72
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 2.2
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 24 2.9
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 23 5.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 23 6.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 23 6.7
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 23 6.7
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 23 6.7
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 23 6.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 23 8.8
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 0.72
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 92 GGTSLSCHQVKRNVPTATTVIAPSAIALAADVLLPCELEFLVIAKWQFICGNEKRQ 259
GGT C Q +P V AP ++ LPC + W + G+++ Q
Sbjct: 111 GGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPC----AAVTAWNGLFGSKEHQ 162
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 0.72
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 238 NKLPFCDDQEF*FAGQQHIRC--*CYSTRRD 152
N PFC D + QQH +C C +R+D
Sbjct: 148 NSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 2.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 125 RNVPTATTVIAPSAIALAADVLLPC 199
R+VP +++ P+A++ +L PC
Sbjct: 176 RSVPCDNSILGPAALSREPTILQPC 200
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 255 RFSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMT 148
+ +LP + N NS ++ A AIALG++T
Sbjct: 847 KLTLPANEYFDTIASNLNSPNADVMKAAAIALGSLT 882
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 222 AMTKNSNSQGSNTSAANAIALGAMTVVAVG 133
A+TK ++G+N SA + G + AVG
Sbjct: 163 AITKTFTAEGANISAIYLVFWGFLFAFAVG 192
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 7 YYFANKIIFPLHYVLLLSSPIRA 75
YYFA+ + P+H ++ L I A
Sbjct: 1076 YYFASADLQPMHSIIALRLAINA 1098
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 189 NTSAANAIALGAMTVVAVGTFLFTWWQER 103
+T++ A+ALG + V TFL + Q+R
Sbjct: 409 HTASVTAVALGPLDVNGYPTFLASSSQDR 437
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 149 RLWRSEHFSLLGGKKGR 99
R+W H+ +L G KG+
Sbjct: 110 RVWYETHYGILMGSKGK 126
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 23.0 bits (47), Expect = 6.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -2
Query: 149 RLWRSEHFSLLGGKKGR 99
R+W H+ +L G KG+
Sbjct: 110 RVWYETHYGILMGSKGK 126
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 116 QVKRNVPTATTVIAPSAIALAADVLLPCELEFLVIAKWQFICG 244
Q+ N T A +A+ ADV L + F ++ W++ G
Sbjct: 292 QIDTNAETLGNNAADLDLAIWADVGLTIDCLFKLVQTWKYSVG 334
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 51 ATIFADSRLELRAVGEPPFLATK 119
+ I D +E +G PP ATK
Sbjct: 490 SVISPDPNIETNEIGVPPVFATK 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,860
Number of Sequences: 5004
Number of extensions: 19003
Number of successful extensions: 44
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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