Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15a05
         (261 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-515|AAF47691.2| 2252|Drosophila melanogaster CG2083-PA ...    27   4.8  
AE014134-1183|AAN10603.1|  708|Drosophila melanogaster CG10806-P...    26   8.3  
AE014134-1182|AAF52449.2|  715|Drosophila melanogaster CG10806-P...    26   8.3  

>AE014296-515|AAF47691.2| 2252|Drosophila melanogaster CG2083-PA
           protein.
          Length = 2252

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 210 NSNSQGSNTSAANAIALGAMTVVAVGT 130
           NS+S  SNT+ +NA    A TVV+ GT
Sbjct: 385 NSSSNTSNTNNSNASNNNATTVVSGGT 411


>AE014134-1183|AAN10603.1|  708|Drosophila melanogaster CG10806-PB,
           isoform B protein.
          Length = 708

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 131 VPTATTVIAPSAIALAADVLLP 196
           + T TT+IAP+ I + +DV +P
Sbjct: 22  ITTPTTIIAPTPIPVPSDVPMP 43


>AE014134-1182|AAF52449.2|  715|Drosophila melanogaster CG10806-PA,
           isoform A protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 131 VPTATTVIAPSAIALAADVLLP 196
           + T TT+IAP+ I + +DV +P
Sbjct: 29  ITTPTTIIAPTPIPVPSDVPMP 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,046,962
Number of Sequences: 53049
Number of extensions: 242898
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 24,988,368
effective HSP length: 65
effective length of database: 21,540,183
effective search space used: 452343843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)