Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15a04
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 82 2e-16
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 80 7e-16
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 79 1e-15
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 1.8
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 1.8
09_02_0336 - 7397745-7398308,7398813-7400723 29 2.3
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.3
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 5.4
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 5.4
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 5.4
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 27 7.2
12_02_0105 + 13647356-13648534 27 9.5
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 27 9.5
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 27 9.5
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 27 9.5
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 82.2 bits (194), Expect = 2e-16
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Frame = -2
Query: 408 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 238
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65
Query: 237 GFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 64
VV K + KPA + + R+ VK + N+YR DL K L R SA
Sbjct: 66 ETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSA 125
Query: 63 ILRS 52
+ RS
Sbjct: 126 VYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 80.2 bits (189), Expect = 7e-16
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -2
Query: 405 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 235
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 234 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 58
V+ K K PAK + + R+ VK + N+YR DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 57 RS 52
RS
Sbjct: 128 RS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 79.4 bits (187), Expect = 1e-15
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Frame = -2
Query: 405 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 235
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67
Query: 234 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 58
V+ K K PAK + + R+ VK + N+YR DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 57 RS 52
RS
Sbjct: 128 RS 129
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -1
Query: 430 LNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGE 251
L+ +N++++ H + Q I CE++ + G LQ L+ + SC GE
Sbjct: 691 LDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYLQDSLLNEKHSCLSCGE 749
Query: 250 P*QEGIHS 227
P + ++S
Sbjct: 750 PPEAHMYS 757
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 426 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 295
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -1
Query: 421 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 320
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 307 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 417
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 384 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 235
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 45 ASGSGGWLKHDEG*PCISLCGSG*P 119
A GSGGW + +G + CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 92 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSR 3
A PF + +S+PR P + RQP P R
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFR 39
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +1
Query: 172 TAD*VFSGLSGSLCFLVHYCESLP-VRVLHDTNSFLVNQAVVPEGVEVSHIVRL---LAE 339
TA+ V G LV C+ P V LHD + F+ +Q ++ V+H++++
Sbjct: 107 TAEVVIRHFDGCKADLV-VCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVA 165
Query: 340 RLF---DIALLHKECIV 381
++F D +LL+ +C +
Sbjct: 166 KIFRGKDTSLLYCQCFM 182
>12_02_0105 + 13647356-13648534
Length = 392
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 305 WRLVTLFGSLLNGFLILRFFTRNALLLRMIIQFSDDDI 418
W L + LL G L+ R + +L+R+I DDI
Sbjct: 250 WALGCIMAQLLGGQLLFRGMSHEDMLIRIIQVLGVDDI 287
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 378 NAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLI--HKKAVGVVENPDRKG 235
N + R+I+ S+ P++++ SF YNGL H A+ PD G
Sbjct: 478 NHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIG 527
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 183 LIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 73
L+ R + G LYK L A+++ T CKA L +
Sbjct: 51 LLGRQSQVGCLDELYKSVEDLSADYFHTKACKAMLMK 87
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 439 EIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAV 338
E+ +KN+ VT+ + ++C PC + KA+
Sbjct: 131 ELNGEKKNMAVTQFEPADARRCFPCWDEPSFKAI 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,216
Number of Sequences: 37544
Number of extensions: 255444
Number of successful extensions: 614
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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