Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14p23
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 97 2e-21
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 30 0.38
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 28 1.5
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 27 3.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 6.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.1
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 26 6.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.1
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 8.1
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 25 8.1
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 97.5 bits (232), Expect = 2e-21
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 3/174 (1%)
Frame = -1
Query: 713 TKDCX*MXKFALRKMGGAXICSADRADMISVGFVW---GDWKAHGSEYYECSRYKEDPNL 543
TK+C + K GG C+ F W G W HG+ +Y C+RY+E +
Sbjct: 288 TKECP-KCSTTIEKNGG---CNHMTCKKCKYEFCWVCLGPWTEHGNNWYTCNRYEEKSST 343
Query: 542 TTDSQHAQAREALKKYLHYYERWENHARSLKLEEQTLESLKSRINEKVMAGEGTWIDWQY 363
+ +++R +L++YLHYY R+ NH +S KL+ + E R+ + + +W++ Q+
Sbjct: 344 SARDSQSKSRASLERYLHYYNRFANHEQSAKLDHELYEHTHKRMTQMQVDSNLSWVEVQF 403
Query: 362 LWDAAKLLKRCRXXXXXXXXXXXYMEVGPRKELFEYQQAQLEAEIENLSWKIER 201
L +A +L +CR Y+ + E+FE Q LE +ENLS ER
Sbjct: 404 LKNAVDILFQCRQTLKWTYAFAYYLARNNQTEIFEDNQRDLELAVENLSELCER 457
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 521 QAREALKKYLHYYERWENHARSLKLEEQTLESLKSRINEKVMAGE 387
+A+E + H E+ SLKL + L+ L+SR+++K+ + E
Sbjct: 46 KAKEDFFVHQHEIEQLRKLKESLKLHREELDELESRVDKKMKSNE 90
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 681 IEKNGGCXHMQCGSCRHDFCWVC 613
+E+ GC HM C C FC++C
Sbjct: 375 VERIDGCCHMNC-LCGTHFCFLC 396
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 638 ADMISVGFVWGDWKAHGSEYY 576
A +I+ G +W W H SEY+
Sbjct: 44 AQLIACGRIWDYWNEHRSEYF 64
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/79 (25%), Positives = 36/79 (45%)
Frame = +3
Query: 312 ILKSISTALEKFSSIPKILPINPCTFPSHNLFVYSAFKTFQCLLF*LQRSSMIFPSFIIM 491
I++S + + +FSS+ I+ C+F + S F C L ++ S + +
Sbjct: 765 IIESWTIFISRFSSV-----ISRCSFTDFE--INSILNFFFCFLHTVEPSGKLTFELAFL 817
Query: 492 QIFLQGFTCLSMLAISSQI 548
+IF + F CL L S +
Sbjct: 818 EIFYELFNCLLHLQFSKYL 836
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -1
Query: 545 LTTDSQ---HAQAREAL--KKYLHYYERWENHARSLKLEEQTLE 429
LTT S H +AR L K+Y HYY +H S+ Q+L+
Sbjct: 338 LTTGSHAISHKEARTLLSVKEYYHYYRNAYHHIDSISHVNQSLK 381
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 349 LNFSSAV-DILFNIPILMHTTWRLVLEKNYLNISRLNLKL 233
+N SA+ +L +I H TW ++ +NY+ + LN L
Sbjct: 962 VNDESAIFSVLDDIVDFNHLTWSILFGENYIILKPLNTDL 1001
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 651 QCGSCRHDFCWVC 613
+CG+C H+ C+VC
Sbjct: 831 KCGTCVHERCYVC 843
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 693 VQICIEKNGGCXHMQCGSCRHDFCW 619
VQ +E+ QC SC + +CW
Sbjct: 578 VQRSLERKNMSTPSQCASCFNQYCW 602
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 143 AFFLLYPFDFPSHPYGLFQPFQSSMTNSLSQL-QVEP-ADIQ--IILF 274
+ F L F P GLF PF S+ + L Q+EP +D++ IILF
Sbjct: 331 SLFFLSLFVLPKTVAGLFYPFGVSLLSDFKVLEQLEPDSDLKKAIILF 378
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -1
Query: 605 DWKAHGSEYYECSRYKEDPNLTTDSQHAQAREALKKYLHYYERW--ENHARSLKLEEQTL 432
DW HG Y C +Y N + H+Q R L+ YE +N SLKL ++ +
Sbjct: 229 DWDPHGLCIYSCFKY--GSNAYSHEPHSQLRN-LQLLGPLYEDIFNKNQEFSLKLNKRDI 285
Query: 431 ESL 423
+ +
Sbjct: 286 KMI 288
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 428 FPMSALLTSEIEHDFPIFHNNANISSRLHVPEHVG 532
+P LLTS + F HN A++ L + VG
Sbjct: 517 YPACPLLTSRVRFCFSASHNKADMDYFLRACDEVG 551
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,591
Number of Sequences: 5004
Number of extensions: 58189
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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