Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14p23
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 188 GLFQPFQSSMTNSLSQLQVEPADIQIIL 271
           GL QP  ++ +NS+SQL+ E + +  IL
Sbjct: 84  GLVQPQGTTFSNSISQLRKEVSLLYRIL 111


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 455 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 354
           LKL +    +LK++I    +  E +W D++  WD
Sbjct: 56  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWD 89


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 455 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 354
           LKL +    +LK++I    +  E +W D++  W+
Sbjct: 60  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE 93


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 455 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 354
           LKL +    +LK++I    +  E +W D++  W+
Sbjct: 60  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWE 93


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 372 INPCTFPSHNLFVYSAFKTFQCLLF*LQRSSMI 470
           INPC +   +     AFK+  C  F  +R++ +
Sbjct: 57  INPCIYALFSKDFRFAFKSIICKCFCKRRTNTL 89


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 372 INPCTFPSHNLFVYSAFKTFQCLLF*LQRSSMI 470
           INPC +   +     AFK+  C  F  +R++ +
Sbjct: 505 INPCIYALFSKDFRFAFKSIICKCFCKRRTNTL 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,293
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)