Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14p18
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.38
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 29 0.88
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 3.5
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.5
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 3.5
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 4.7
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 6.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 26 6.2
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 6.2
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 26 6.2
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 26 6.2
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 8.2
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 8.2
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 8.2
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.2
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 336 SKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLDSHLNFE--IKIQNKFKDAPRGM 163
S VG+A K K ++ +L L DKDT + ++ E I+++N+ + G
Sbjct: 346 SLVGQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGNIGLENRIRVENRLRSLEGGK 405
Query: 162 PFQSRNMPFGQRKIR 118
P Q K++
Sbjct: 406 LLPLPTAPVQQSKVQ 420
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -3
Query: 465 RNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKT 307
RN++A+ +AD ++ + ++SV + +S ++K+ T E K KT
Sbjct: 64 RNVRAVEIADENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLEPKT 116
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 381 SPDQKDKHTFFEETISKVGEAVEKTNNKDT-KIEFEDV 271
S D D HT +++ + EK NNKDT K+E D+
Sbjct: 408 SEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDI 445
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 245 SPLSISAFLTSSNSILVSLLFVFSTASPT-LDIVSSKNVCLSF*SGESMFNTLRNIGIAS 421
S + S+ LTSS+S+ S ++ASPT + SS S S + ++L + I S
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITS 136
Query: 422 STLPISA 442
S+L S+
Sbjct: 137 SSLASSS 143
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 603 WSDMASTGTLPLRRAATSFA 544
W+D G LP+RRAA S A
Sbjct: 862 WNDAPMLGQLPMRRAAPSMA 881
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -3
Query: 489 QRQHYITIRNIKAM--ALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAV 316
+R+ + + I+ + A+ G VD+ + + + D K ++ + + EAV
Sbjct: 1003 RREEMVREKEIRLLYRAMIKFGLVDERFDTIVKEAELQATDPKRIYSLSADMVKACDEAV 1062
Query: 315 EKTNNKDTKIEFEDVRKALI 256
E+ DTK + RKA++
Sbjct: 1063 ERLGADDTK--NKQPRKAIL 1080
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 459 IKAMALADMGRVDDAIPILRSV 394
IKA L ++GR D+ PIL+ +
Sbjct: 466 IKATVLRNLGRTDEVFPILQKI 487
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 236 LSMSPLSISAFLTSSNSILVSLLFVFSTASPT 331
L +PL+ + L +S S+L + F F+ AS T
Sbjct: 344 LGTAPLASQSILLTSTSLLFQIPFAFAVASST 375
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = -3
Query: 348 EETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPR 169
+ET+ V +D ++E+ ++ L S L+ + I+ KF P
Sbjct: 136 KETLDNVDFDARSKILQDLRLEYAEILLTKFNFEKKGYQNLSSALDTILHIK-KFSKFPN 194
Query: 168 GMPFQSRNMPFGQRKIRKDLQ*LLNY 91
G+ Q N+ K R+D+Q +N+
Sbjct: 195 GLVTQLCNIFVNHSKAREDIQKAVNH 220
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -3
Query: 258 IERGLIDKDTLDSHLN-FEIKI-QNKFKDAPRGMPFQSRNMPFGQRKIRKDLQ 106
+++G +D D S FE+++ ++F+ P G N+P + +KDL+
Sbjct: 672 VQKGPLDVDMDHSQTPLFEMRVFHDRFEKIPTGWNMSVSNLPLLTERDKKDLE 724
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 636 YSLYNKLPLSTPHSNLGNF 692
Y+LY KL L PH ++ N+
Sbjct: 462 YALYQKLDLPLPHEHITNY 480
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 305 FVFSTASPTLDIVSSKNVCLSF*SGESMFNTLRNIGIASSTL 430
FV A+P L I SSK+ L+ G + FN L+ GI S L
Sbjct: 601 FVNYWATPELVIHSSKDYRLTESEGIAAFNVLQYKGIPSRLL 642
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 387 IDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIE 283
+D+PD K+ FEE ++V + VE+ + + IE
Sbjct: 158 MDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIE 192
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 6.2
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = -3
Query: 438 DMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKAL 259
D+G D +PI+ + +S D+K KH E I + K + + ++ D++
Sbjct: 124 DIGGKDLLVPIITDRMLPESNDEKLKH-HAESAIHTT--VINKEDEEQERVAL-DLQSLA 179
Query: 258 IERGLIDKDTLDSHLNFEIKIQNKFKDAPRGM 163
GL +++ ++ H ++ + PR M
Sbjct: 180 QHLGLTEQEGMEDHFKDQMVLMQFPDKLPRFM 211
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 516 HIALESISGQRQHYITIRNIKAMALADMG 430
HIAL++ + + Y T ++I+++ + DMG
Sbjct: 837 HIALDAFALHERGYPTDQSIRSLQIPDMG 865
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 462 NIKAMALADMGRVDDAIPILRSVLNIDSP 376
+ K+ L D G DD + + S+ NI+SP
Sbjct: 461 DFKSQRLLDDGVFDDVLSAISSMSNIESP 489
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 266 FLTSSNSILVSLLFVFSTASPTLDIVSSKNV 358
FLT S ++++ LLF A P+L + K +
Sbjct: 490 FLTFSENLVLPLLFQIKIALPSLAVTRRKEI 520
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -3
Query: 303 NKDTKIEFEDVRKALIERGLIDKDTLDSHLNFEIK-IQNKFKDAPRGMPFQS--RNMPFG 133
N IEF D+ + +GLID+ ++ + ++ K A +G S RN
Sbjct: 181 NSANDIEFFDIEEVSSRKGLIDRTPSKRNVTSRVSDAYSRLKSAVKGESSLSFKRNRSKS 240
Query: 132 QRKIR 118
+RKI+
Sbjct: 241 KRKIQ 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,246
Number of Sequences: 5004
Number of extensions: 65407
Number of successful extensions: 204
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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