Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14p18
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457290-1|CAG33571.1| 236|Homo sapiens FLJ12598 protein. 50 6e-06
BC018720-1|AAH18720.1| 236|Homo sapiens PTCD2 protein protein. 50 6e-06
AK022660-1|BAB14162.1| 236|Homo sapiens protein ( Homo sapiens ... 50 6e-06
L37033-1|AAB00102.1| 355|Homo sapiens FK-506 binding protein ho... 31 5.4
BX538124-1|CAD98028.1| 451|Homo sapiens hypothetical protein pr... 31 5.4
BC009966-1|AAH09966.1| 355|Homo sapiens FKBP8 protein protein. 31 5.4
AY278607-1|AAQ84561.1| 412|Homo sapiens FKBP8 protein. 31 5.4
AY225339-1|AAO39020.1| 412|Homo sapiens FK506-binding protein 3... 31 5.4
AK222838-1|BAD96558.1| 372|Homo sapiens FK506-binding protein 8... 31 5.4
AC005387-2|AAC28753.1| 355|Homo sapiens FK-506 binding protein ... 31 5.4
M33308-1|AAA61283.1| 1066|Homo sapiens VCL protein. 30 7.2
BX537994-1|CAD97952.1| 222|Homo sapiens hypothetical protein pr... 30 7.2
AL731576-5|CAI39673.1| 1066|Homo sapiens vinculin protein. 30 7.2
AL596247-9|CAI13972.1| 1066|Homo sapiens vinculin protein. 30 7.2
AK124194-1|BAC85800.1| 164|Homo sapiens protein ( Homo sapiens ... 30 7.2
>CR457290-1|CAG33571.1| 236|Homo sapiens FLJ12598 protein.
Length = 236
Score = 50.4 bits (115), Expect = 6e-06
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Frame = -3
Query: 669 VLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRAATSFAGLALKQGAPHIALESISG 490
VL A CYK N+P+S + T L + G + RRA+ LAL Q A+ S
Sbjct: 52 VLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAVSIFSQ 111
Query: 489 -QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVE 313
I N+ + +++ I L++ + +H F EE ++KV E V+
Sbjct: 112 IMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVK 171
Query: 312 KTNNKDTKIEFEDVRKALIERGLIDKDTLDSHL 214
K F+++ L G + D+LD+ L
Sbjct: 172 DVPALVAK--FDEIYGTLHITGQVTTDSLDAVL 202
>BC018720-1|AAH18720.1| 236|Homo sapiens PTCD2 protein protein.
Length = 236
Score = 50.4 bits (115), Expect = 6e-06
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Frame = -3
Query: 669 VLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRAATSFAGLALKQGAPHIALESISG 490
VL A CYK N+P+S + T L + G + RRA+ LAL Q A+ S
Sbjct: 52 VLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAVSIFSQ 111
Query: 489 -QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVE 313
I N+ + +++ I L++ + +H F EE ++KV E V+
Sbjct: 112 IMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVK 171
Query: 312 KTNNKDTKIEFEDVRKALIERGLIDKDTLDSHL 214
K F+++ L G + D+LD+ L
Sbjct: 172 DVPALVAK--FDEIYGTLHITGQVTTDSLDAVL 202
>AK022660-1|BAB14162.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ12598 fis, clone NT2RM4001384. ).
Length = 236
Score = 50.4 bits (115), Expect = 6e-06
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Frame = -3
Query: 669 VLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRAATSFAGLALKQGAPHIALESISG 490
VL A CYK N+P+S + T L + G + RRA+ LAL Q A+ S
Sbjct: 52 VLAFAICYKLNSPESFKICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAVSIFSQ 111
Query: 489 -QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVE 313
I N+ + +++ I L++ + +H F EE ++KV E V+
Sbjct: 112 IMNPESIACINLNIIIHIQSNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVK 171
Query: 312 KTNNKDTKIEFEDVRKALIERGLIDKDTLDSHL 214
K F+++ L G + D+LD+ L
Sbjct: 172 DVPALVAK--FDEIYGTLHITGQVTTDSLDAVL 202
>L37033-1|AAB00102.1| 355|Homo sapiens FK-506 binding protein
homologue protein.
Length = 355
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 255 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 295
>BX538124-1|CAD98028.1| 451|Homo sapiens hypothetical protein
protein.
Length = 451
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 351 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 391
>BC009966-1|AAH09966.1| 355|Homo sapiens FKBP8 protein protein.
Length = 355
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 255 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 295
>AY278607-1|AAQ84561.1| 412|Homo sapiens FKBP8 protein.
Length = 412
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 312 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 352
>AY225339-1|AAO39020.1| 412|Homo sapiens FK506-binding protein 38
protein.
Length = 412
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 312 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 352
>AK222838-1|BAD96558.1| 372|Homo sapiens FK506-binding protein 8
variant protein.
Length = 372
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 272 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 312
>AC005387-2|AAC28753.1| 355|Homo sapiens FK-506 binding protein
homologue protein.
Length = 355
Score = 30.7 bits (66), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 456 KAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISK 331
K LA G +AIPILR+ L ++ P K H + + K
Sbjct: 255 KGKVLAQQGEYSEAIPILRAALKLE-PSNKTIHAELSKLVKK 295
>M33308-1|AAA61283.1| 1066|Homo sapiens VCL protein.
Length = 1066
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -3
Query: 489 QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEK 310
+RQ +T + + M + M V + +P+L S + I + K+ EE + VEK
Sbjct: 177 ERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEK 236
Query: 309 TNNKDTKI 286
+ + +I
Sbjct: 237 MSAEINEI 244
>BX537994-1|CAD97952.1| 222|Homo sapiens hypothetical protein
protein.
Length = 222
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -3
Query: 489 QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEK 310
+RQ +T + + M + M V + +P+L S + I + K+ EE + VEK
Sbjct: 104 ERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEK 163
Query: 309 TNNKDTKI 286
+ + +I
Sbjct: 164 MSAEINEI 171
>AL731576-5|CAI39673.1| 1066|Homo sapiens vinculin protein.
Length = 1066
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -3
Query: 489 QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEK 310
+RQ +T + + M + M V + +P+L S + I + K+ EE + VEK
Sbjct: 177 ERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEK 236
Query: 309 TNNKDTKI 286
+ + +I
Sbjct: 237 MSAEINEI 244
>AL596247-9|CAI13972.1| 1066|Homo sapiens vinculin protein.
Length = 1066
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -3
Query: 489 QRQHYITIRNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEK 310
+RQ +T + + M + M V + +P+L S + I + K+ EE + VEK
Sbjct: 177 ERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEK 236
Query: 309 TNNKDTKI 286
+ + +I
Sbjct: 237 MSAEINEI 244
>AK124194-1|BAC85800.1| 164|Homo sapiens protein ( Homo sapiens
cDNA FLJ42200 fis, clone THYMU2034647. ).
Length = 164
Score = 30.3 bits (65), Expect = 7.2
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = -1
Query: 350 LKKLYPKLVKQLKKRTTRIPRSNSRMSGRHL*RED-----SLIRILSTVI*ILKLKYKTS 186
+ ++Y +L + KK+T R+ ++ RH+ +ED +R ST + I +++ KT+
Sbjct: 56 ISRIYKELKQIYKKKTNNSIRNWAKDMNRHISKEDIYAATKHMRKSSTSLVIREMQIKTT 115
Query: 185 LRMHHVECLFNRETCRLANEKLGRIC 108
+R HH+ + + N + R C
Sbjct: 116 MR-HHLTSVKMAIIKKSGNNRFWREC 140
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,312,264
Number of Sequences: 237096
Number of extensions: 2093591
Number of successful extensions: 11767
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11767
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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