Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14p18
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.0  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 347 KKLYPKLVKQLKKRTTRIPRSNSR 276
           KK   +++ ++KK+TTR   S S+
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSK 143


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 347 KKLYPKLVKQLKKRTTRIPRSNSR 276
           KK   +++ ++KK+TTR   S S+
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSK 143


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 347 KKLYPKLVKQLKKRTTRIPRSNSR 276
           KK   +++ ++KK+TTR   S S+
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSK 143


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 47  DDSFYTVHSHIFIY**FSNYCKSFLIFRWPNGMF 148
           +DS+   H+  +    + NY  +   F+W +G+F
Sbjct: 207 NDSWRITHNFFYFDPRYGNYNINGFNFQWKDGLF 240


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/57 (22%), Positives = 19/57 (33%)
 Frame = -3

Query: 411 PILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLI 241
           P+L S     SP    K T     ++         + K  +      RKA    G+I
Sbjct: 321 PVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGII 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,294
Number of Sequences: 438
Number of extensions: 4337
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)